PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT56773.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | LBD | ||||||||
Protein Properties | Length: 277aa MW: 30302.4 Da PI: 8.0662 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 98.2 | 8.2e-31 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a p++ r+++++s++yeA+ r+ +P+yG+vg+++++++ql+q ++e+ PHT56773.1 4 SCNGCRVLRKGCSESCSIRPCLqwiktPESQSNATVFLAKFYGRAGLMNLINAGPHHLRPAIFRSMLYEACGRIVNPIYGSVGLLWSGNWQLCQNAVEA 102 6************************************************************************************************99 PP DUF260 95 allke 99 +l ++ PHT56773.1 103 VLKGA 107 98766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence |
MRMSCNGCRV LRKGCSESCS IRPCLQWIKT PESQSNATVF LAKFYGRAGL MNLINAGPHH 60 LRPAIFRSML YEACGRIVNP IYGSVGLLWS GNWQLCQNAV EAVLKGAPIT PIASETAVNN 120 NGPPLKLPYD IRHISKDENN STKPSDLHRV RTRCRFKRSG NKKTKETKPN PVCSGSGKAN 180 GSTSHESSLS HQSEAAAVAA ANLECESREI ESLQSTEMAE AEDSGMAKEE EGEIELELTL 240 GFSSSFATAH DHHIRKETKA VYLLDDAGEC KMKLGLH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 4e-88 | LBD family protein |