PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT56773.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 277aa    MW: 30302.4 Da    PI: 8.0662
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT56773.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.28.2e-314107199
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++s++yeA+ r+ +P+yG+vg+++++++ql+q ++e+
  PHT56773.1   4 SCNGCRVLRKGCSESCSIRPCLqwiktPESQSNATVFLAKFYGRAGLMNLINAGPHHLRPAIFRSMLYEACGRIVNPIYGSVGLLWSGNWQLCQNAVEA 102
                 6************************************************************************************************99 PP

      DUF260  95 allke 99 
                 +l ++
  PHT56773.1 103 VLKGA 107
                 98766 PP

Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MRMSCNGCRV LRKGCSESCS IRPCLQWIKT PESQSNATVF LAKFYGRAGL MNLINAGPHH  60
LRPAIFRSML YEACGRIVNP IYGSVGLLWS GNWQLCQNAV EAVLKGAPIT PIASETAVNN  120
NGPPLKLPYD IRHISKDENN STKPSDLHRV RTRCRFKRSG NKKTKETKPN PVCSGSGKAN  180
GSTSHESSLS HQSEAAAVAA ANLECESREI ESLQSTEMAE AEDSGMAKEE EGEIELELTL  240
GFSSSFATAH DHHIRKETKA VYLLDDAGEC KMKLGLH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-88LBD family protein