PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT56762.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 223aa    MW: 24475.8 Da    PI: 6.9826
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT56762.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260102.63.4e-322103197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA  r+ +Pv+Gavg++++++++++q+++e+
  PHT56762.1   2 SCNGCRVLRKGCSENCILRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPENQRPALFQSLLYEAAGRTVNPVNGAVGLLWTGNWHVCQAAVET 100
                 6***********************************************************************************************999 PP

      DUF260  95 all 97 
                 +l+
  PHT56762.1 101 VLR 103
                 876 PP

Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MSCNGCRVLR KGCSENCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPENQR  60
PALFQSLLYE AAGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGALRPI SEFLGASLEI  120
DEVSECNNTF KLQDPSVNML QQKRRRSPEE TSMLTDLNLS LTAGFNQQVY NNSHTLPEKH  180
VRPGTPSMNS EESGTTSTCF QSVGVVIGDH YQGKEPKLLS LFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.13e-80LBD family protein