PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT56696.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 233aa MW: 27163.1 Da PI: 10.13 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.1 | 1.1e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng++KKA+EL +LCdaev +iifsstgklye+s+ PHT56696.1 10 RIDNSTSRQVTFSKRRNGLMKKAKELAILCDAEVGLIIFSSTGKLYEFSN 59 8***********************************************95 PP | |||||||
2 | K-box | 75.7 | 1.2e-25 | 80 | 170 | 8 | 98 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ ++ + +q+e++ L+++++ Lq+++R+l+Ge+L L +keL +Le++Le sl+ iR+kK+++l+++i+el +k ++++en +L kk+ PHT56696.1 80 HNPLTELKLWQREAEILRQQLQDLQENHRQLMGEELRGLGVKELTNLENKLEMSLRGIRTKKEQILKDEIQELTRKGSMIHQENLELYKKV 170 456677899*******************************************************************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLMK KAKELAILCD AEVGLIIFSS TGKLYEFSNT 60 SMRSVIERYN KTKDEHQQLH NPLTELKLWQ REAEILRQQL QDLQENHRQL MGEELRGLGV 120 KELTNLENKL EMSLRGIRTK KEQILKDEIQ ELTRKGSMIH QENLELYKKV NLIRQENAEL 180 YKKAYGTRDA TAINGTTNYP YRFTVSREVH APIHLQLSQP DPQNFETPAR VSN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 1e-105 | MIKC_MADS family protein |