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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PHT56647.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 305aa MW: 35019.5 Da PI: 6.354 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 112.7 | 2e-35 | 54 | 155 | 2 | 100 |
NF-YC 2 lksfwekqiekatd..fk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97
l fw++q e+ +k +helP++ri++ +k++++vkm+sa++ vll+ka e+filelt r+w+++e+ krrtlk++dia a+ + + fdfl divp
PHT56647.1 54 LSCFWKRQKEEILHsvLKrKHELPISRIRRAMKSNDQVKMVSAHSTVLLAKAIEMFILELTRRAWMQSEQEKRRTLKRCDIARAIRNEELFDFLSDIVP 152
778*****888654224459******************************************************************************9 PP
NF-YC 98 rde 100
++
PHT56647.1 153 LQN 155
876 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 305 aa Download sequence |
MDFNSSSMEL PKSSSALSSD MQRPVHMQKS MPSDKKIQQD EDERDPRFML KEELSCFWKR 60 QKEEILHSVL KRKHELPISR IRRAMKSNDQ VKMVSAHSTV LLAKAIEMFI LELTRRAWMQ 120 SEQEKRRTLK RCDIARAIRN EELFDFLSDI VPLQNYKVQE AANDGQGNEL HPAHQMVKPN 180 NNSVHAEAND GQGNEFRPTH QLVQPNNIPV QQQTNDGQGN MFDPAHQFVQ PNNSPYQFQV 240 KEAANGGQGN EFHPVYQMVQ PNNIPASFTS TQGIPAPLMS PPLFNFSPED EFIIDGFLMD 300 YREGL |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 128 | 132 | TLKRC |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G63470.2 | 7e-34 | NF-YC family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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