PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT56641.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

SRS

Protein Properties

Length: 348aa MW: 37236.8 Da PI: 6.827

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT56641.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	222.3	9.7e-69	115	276	3	155
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrel.........kskkqsalsstkl 91 g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thv+stWvpaakrrerq+qla++++++++++ ++++++++r+l + ++s+l +t++ PHT56641.1 115 GGGISCQDCGNQAKKDCQHMRCRTCCKSRGFQCQTHVRSTWVPAAKRRERQNQLATLQHHQEEEQhQQQQQQETRQLhrdnpkrlrEDPSASSLVCTRI 213 5789***************************************************999888774333333333335566666544455667777776 PP DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155 + s++ le+ ++P++v s+avf+cvr+ssvdd+e+++aYqtav+igGhvfkGiLydqG+e++ PHT56641.1 214 LPS-STSGLEVGNFPAKVTSNAVFHCVRMSSVDDAEDQFAYQTAVNIGGHVFKGILYDQGPENQ 276 665.455899999**********************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MAGFFSLGGG AAAASSSQDH QDSTNNPNTE ITPESNWFLY RNDQELPTTY RGFELWQPSN 60 SQPQIRHPIN PLQDLYPTAA VGLGIGPSDS SGLGARPDHN PSSGGSGLVM MRSGGGGISC 120 QDCGNQAKKD CQHMRCRTCC KSRGFQCQTH VRSTWVPAAK RRERQNQLAT LQHHQEEEQH 180 QQQQQQETRQ LHRDNPKRLR EDPSASSLVC TRILPSSTSG LEVGNFPAKV TSNAVFHCVR 240 MSSVDDAEDQ FAYQTAVNIG GHVFKGILYD QGPENQYMAA GESSSGGGSA SHQHNLIGAA 300 GTSTSAATSG GGGAAAAPEG SSYLDPSLYP APLNTFMAGT QFFPPPRS

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MAGFFSLGGG AAAASSSQDH QDSTNNPNTE ITPESNWFLY RNDQELPTTY RGFELWQPSN  60
SQPQIRHPIN PLQDLYPTAA VGLGIGPSDS SGLGARPDHN PSSGGSGLVM MRSGGGGISC  120
QDCGNQAKKD CQHMRCRTCC KSRGFQCQTH VRSTWVPAAK RRERQNQLAT LQHHQEEEQH  180
QQQQQQETRQ LHRDNPKRLR EDPSASSLVC TRILPSSTSG LEVGNFPAKV TSNAVFHCVR  240
MSSVDDAEDQ FAYQTAVNIG GHVFKGILYD QGPENQYMAA GESSSGGGSA SHQHNLIGAA  300
GTSTSAATSG GGGAAAAPEG SSYLDPSLYP APLNTFMAGT QFFPPPRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	9e-79	SRS family protein