PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT56527.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 1611aa MW: 175882 Da PI: 6.8338

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT56527.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.6	7.1e-06	1588	1611	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+ f+++G Ck G+ C + H+ PHT56527.1 1588 GQRICK-FYESGRCKKGAACDYLHP 1611 6899.8899***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1611 aa Download sequence
MAAAAAAGSS SSAMLDGSVG TSVGLTKSEQ SSFVHCTEGS QLVGVQSTVA GVAPTEAAVV 60 DGRNSAVNLI GHGGVDRRKR GRPPRSQAVK PPPPKKQREE DEDVCFICFD GGSLVLCDRR 120 GCPKAYHPAC IKRDEAFFRS KAKWNCGWHI CSVCQKTSHY LCYTCTYSLC KACTKNADYL 180 CVRGNKGFCS TCMKTIMLIE NNDQANKEMV QVDFDDKTSW EYLFKVYWVI LKEKLSLTLD 240 ELVQAKNPWK ESDAVYGKRP LLPYGHYVAN DGKGISGKSF DQSELKKPLE LLELSKKDPP 300 STESRTTAKS NPSIFSSTPQ SELTKPAEEL ELQEEDCLRT KQGTTAVQTS VNGCMEWASK 360 ELLDFVAHMK DGNTSAISQF DVQALLLDYI KKNKLRDPRR KSEIICDLRL KSLFGKPRVG 420 HIEMLKLLEF HFLIKENSEK SAFIPAGIVG TVTGHVEPDD SNDISSSKKR KSRKNGEVKI 480 TQINLDEFAA IDAHNINFLY LRRDMMESLA GDVEKFHDRV IGSVVRIKIP SNDQKQEIYR 540 LVHVVGTCKS SEPYKIRDKA VDFLIEVLNL DKKEAISIDT ISNQDFSEDE CRRLRQSVKC 600 GLVKRLTVGE IQKKAMELRA VKLNDSLEAE ILRLNHLRDR ASEKGHKKEY PLSRQYTLIV 660 LYMQKECIEK LELLKTPKER QRRLMEIPEV HADPKMNPDY ESEGEHNDKR NVEHPAPRYT 720 RISRRDEKLV SLGSRVKEEG SIMARCRSSE KREACGTNIF DKKGNQFTVE QAVDRSGSEA 780 SIASLSTANS SSVNSCETDK LWHYRDPAKR IQGPFSVMQL RKWNTSGLFP PDMRIWTNHE 840 HEDSVLLTNA LKGLFHKEFQ VHDKKSSQSW EPAGLDSRTS VRWTESATGS GGECGKKEAP 900 RHLHNANYYS NSNTQFTRTS GWLPPSFQQC VESLKANNSC FDKPQLSSSP SSSQREVILA 960 LPRQEKGQEN DNCHSVAAHG TQNSHKSTSC YAQSNSQYLG PSSGQNQGSF TSNKCSINLD 1020 CGSTFASATQ SRDSFEQKGK MNFPDLPSPT PETRYGDIEA QAAEKLLLLS SVIPFCGSDI 1080 HDLPSPTPIS NSEAQGGHAD ENKESGPSSL PDCEPQGGHA AENKESGLSS LPVQESGQRW 1140 SSASSPVVGG PHLREIADEW GRSSPAAKPS TEEWDSGVVS VSSQKPADTV GDHVATPPSH 1200 GDQLTAKPST DHPGLVSVSS LKPADTVGDH VATPPANGDQ LTAKPSTDHP GLVSISSLKP 1260 ADAVGDLVAT PPSTADQLTA KPSAEEWDGL VSVSSLKPAE VVGDHVATPT SNADQLNHTS 1320 PSHPMSNFFG EPIEFSTLAE ESVSDLLAEV DALESQNQNG MGSPTSAMRC SEGMIPGCKT 1380 GYFSPMEELS PTHDPVRSDA LSSTGDLQLP CQSTVTDETV GASRADAFDP LRRSAGNSST 1440 SSEGETKSAD VLFSQGDVGS VIPAPCTTSQ TTAFSAMGRS TGFEGMTNGR GAAPGNQNWG 1500 GPVQGYANFG YGSSTGAAWG NSHMNRGAPF SGNPMWDSQR RYAGERSGGP RDWALQGGES 1560 GFGRGRSSWN NRQQPYGGGG YSRPPPKGQR ICKFYESGRC KKGAACDYLH P

Sequence ? help Back to Top

Protein Sequence Length: 1611 aa Download sequence

MAAAAAAGSS SSAMLDGSVG TSVGLTKSEQ SSFVHCTEGS QLVGVQSTVA GVAPTEAAVV  60
DGRNSAVNLI GHGGVDRRKR GRPPRSQAVK PPPPKKQREE DEDVCFICFD GGSLVLCDRR  120
GCPKAYHPAC IKRDEAFFRS KAKWNCGWHI CSVCQKTSHY LCYTCTYSLC KACTKNADYL  180
CVRGNKGFCS TCMKTIMLIE NNDQANKEMV QVDFDDKTSW EYLFKVYWVI LKEKLSLTLD  240
ELVQAKNPWK ESDAVYGKRP LLPYGHYVAN DGKGISGKSF DQSELKKPLE LLELSKKDPP  300
STESRTTAKS NPSIFSSTPQ SELTKPAEEL ELQEEDCLRT KQGTTAVQTS VNGCMEWASK  360
ELLDFVAHMK DGNTSAISQF DVQALLLDYI KKNKLRDPRR KSEIICDLRL KSLFGKPRVG  420
HIEMLKLLEF HFLIKENSEK SAFIPAGIVG TVTGHVEPDD SNDISSSKKR KSRKNGEVKI  480
TQINLDEFAA IDAHNINFLY LRRDMMESLA GDVEKFHDRV IGSVVRIKIP SNDQKQEIYR  540
LVHVVGTCKS SEPYKIRDKA VDFLIEVLNL DKKEAISIDT ISNQDFSEDE CRRLRQSVKC  600
GLVKRLTVGE IQKKAMELRA VKLNDSLEAE ILRLNHLRDR ASEKGHKKEY PLSRQYTLIV  660
LYMQKECIEK LELLKTPKER QRRLMEIPEV HADPKMNPDY ESEGEHNDKR NVEHPAPRYT  720
RISRRDEKLV SLGSRVKEEG SIMARCRSSE KREACGTNIF DKKGNQFTVE QAVDRSGSEA  780
SIASLSTANS SSVNSCETDK LWHYRDPAKR IQGPFSVMQL RKWNTSGLFP PDMRIWTNHE  840
HEDSVLLTNA LKGLFHKEFQ VHDKKSSQSW EPAGLDSRTS VRWTESATGS GGECGKKEAP  900
RHLHNANYYS NSNTQFTRTS GWLPPSFQQC VESLKANNSC FDKPQLSSSP SSSQREVILA  960
LPRQEKGQEN DNCHSVAAHG TQNSHKSTSC YAQSNSQYLG PSSGQNQGSF TSNKCSINLD  1020
CGSTFASATQ SRDSFEQKGK MNFPDLPSPT PETRYGDIEA QAAEKLLLLS SVIPFCGSDI  1080
HDLPSPTPIS NSEAQGGHAD ENKESGPSSL PDCEPQGGHA AENKESGLSS LPVQESGQRW  1140
SSASSPVVGG PHLREIADEW GRSSPAAKPS TEEWDSGVVS VSSQKPADTV GDHVATPPSH  1200
GDQLTAKPST DHPGLVSVSS LKPADTVGDH VATPPANGDQ LTAKPSTDHP GLVSISSLKP  1260
ADAVGDLVAT PPSTADQLTA KPSAEEWDGL VSVSSLKPAE VVGDHVATPT SNADQLNHTS  1320
PSHPMSNFFG EPIEFSTLAE ESVSDLLAEV DALESQNQNG MGSPTSAMRC SEGMIPGCKT  1380
GYFSPMEELS PTHDPVRSDA LSSTGDLQLP CQSTVTDETV GASRADAFDP LRRSAGNSST  1440
SSEGETKSAD VLFSQGDVGS VIPAPCTTSQ TTAFSAMGRS TGFEGMTNGR GAAPGNQNWG  1500
GPVQGYANFG YGSSTGAAWG NSHMNRGAPF SGNPMWDSQR RYAGERSGGP RDWALQGGES  1560
GFGRGRSSWN NRQQPYGGGG YSRPPPKGQR ICKFYESGRC KKGAACDYLH P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	0.0	C3H family protein