PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT56104.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 381aa MW: 43289.1 Da PI: 5.9058

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT56104.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.3	4.2e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++++G g+W+t ++ g+ R++k+c++rw +yl PHT56104.1 14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.4	2.9e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ PHT56104.1 67 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MGRAPCCDKN GLKKGPWTPE EDQKLIDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHSPRL DLLDLSSILN PSFYNNSSSL HQMNLSRLLG HVQPLVNPEV LRLATSLLSS 180 QRQNTNNSFM IPNNLQENQI CQNQLPQMVQ NSQIQAPIQD YPTCTTLSTT PCVPFSSHEA 240 QLMQPPTTNM EGFSSKLENF SNSTSCQVND EWQLSNGMPT SNLTDDYFPL QNYGYYDPLP 300 SDGSTLIQSN DSNNNNNFSF QSTVLSNLST PSSSPTPLDS NSTYFNNSSS TTTEDERDSY 360 CSNMLNFDNI PNIWDTTNEF M

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MGRAPCCDKN GLKKGPWTPE EDQKLIDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHSPRL DLLDLSSILN PSFYNNSSSL HQMNLSRLLG HVQPLVNPEV LRLATSLLSS  180
QRQNTNNSFM IPNNLQENQI CQNQLPQMVQ NSQIQAPIQD YPTCTTLSTT PCVPFSSHEA  240
QLMQPPTTNM EGFSSKLENF SNSTSCQVND EWQLSNGMPT SNLTDDYFPL QNYGYYDPLP  300
SDGSTLIQSN DSNNNNNFSF QSTVLSNLST PSSSPTPLDS NSTYFNNSSS TTTEDERDSY  360
CSNMLNFDNI PNIWDTTNEF M

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-113	MYB family protein