PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT55823.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 247aa MW: 28655.3 Da PI: 9.8599

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT55823.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	94.9	3.5e-30	25	74	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRr g lKKA+ELSvLCdaeva+i+fss+g+lyey+ PHT55823.1 25 KRIENTTNRQVTFCKRRSGFLKKAYELSVLCDAEVALIVFSSRGRLYEYA 74 79***********************************************8 PP
2	K-box	112.5	4.1e-37	93	189	4	100
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s++ s +ea+a+++qqe++kL+++i nLq+++R+++Ge L L+++eL++Leq++ek+++k+RskKne+l+++ie++qk+e +l+++n++Lr+k++e PHT55823.1 93 SNTGSISEANAQYYQQESSKLRAQIGNLQNQNRNYMGEALAALNHRELRNLEQKIEKGISKVRSKKNEMLFAEIEYMQKREVDLHNNNQYLRAKIAE 189 3444599***************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MDFQSDLTRE ISPQRKLGRG KIEIKRIENT TNRQVTFCKR RSGFLKKAYE LSVLCDAEVA 60 LIVFSSRGRL YEYANNSVKA TIERYKKACT DSSNTGSISE ANAQYYQQES SKLRAQIGNL 120 QNQNRNYMGE ALAALNHREL RNLEQKIEKG ISKVRSKKNE MLFAEIEYMQ KREVDLHNNN 180 QYLRAKIAET ERAQQHQQQM NLMPGSSSSY ELVPPPQQFD TRNYLQVNGL QTNNHYPRQD 240 QPPLQLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	1e-121	MIKC_MADS family protein