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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PHT55377.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 273aa MW: 31148.5 Da PI: 6.1035 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 55.8 | 7.8e-18 | 70 | 123 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa+ k
PHT55377.1 70 KKRRLNMEQVKALERSFEIGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCK 123
456899**********************************************99 PP
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| 2 | HD-ZIP_I/II | 129.2 | 1.6e-41 | 69 | 160 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekkrrl+ eqvk+LE+sFe +kLeperK++lar+Lgl+prq+a+WFqnrRAR ktkqlEkdye Lkr++d+lk++n++L++++++L++el+
PHT55377.1 69 EKKRRLNMEQVKALERSFEIGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCKTKQLEKDYEILKRQCDKLKSDNDALKTQNKQLHSELQ 160
69***************************************************************************************997 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 273 aa Download sequence |
MAFVPGAPEE NDLPPSFPSV FPPRCAPHQE FQGISSVLMR RAMSFDHQDT RADDIDMSDD 60 DGSSQLLGEK KRRLNMEQVK ALERSFEIGN KLEPERKMQL ARALGLKPRQ IAIWFQNRRA 120 RCKTKQLEKD YEILKRQCDK LKSDNDALKT QNKQLHSELQ LLTLSNRESA GGGTTILFNL 180 NKENEGSNWN NGSGDENSTI IDVNLGTTTR TSSTNSPHNN NNTNNHDHVF PTSANYKIEE 240 QTHVPEDGYC NLFNNVVEDQ TNYWPLPVQQ HFY |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 118 | 126 | RRARCKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G15150.1 | 5e-50 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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