PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT55231.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | LBD | ||||||||
Protein Properties | Length: 294aa MW: 33031.1 Da PI: 7.0908 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.6 | 1.9e-42 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC+++Cv+apyfp +qp kfanvhk+FGasnv kll++l+ ++reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+q++ +l ++k+ PHT55231.1 7 PCAACKFLRRKCTQECVFAPYFPPDQPLKFANVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEYRLRDPVYGCVGLISILQHKLKQVQDDLLTAKK 105 7********************************************************************************************999887 PP DUF260 100 e 100 e PHT55231.1 106 E 106 6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence |
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPLKFANVH KVFGASNVAK LLNELNATQR 60 EDAVNSLAYE AEYRLRDPVY GCVGLISILQ HKLKQVQDDL LTAKKELATY IGPQAMLPML 120 QHSGYLQQHP NNPSSSTMMP YNMPPTGMQQ HGGQLIMRDP QQQQQQQNHQ QVIEAHQLAA 180 IMAATREQQD MMRTYEQQPP PQQQQFNGGF DSAVGPVTAT GFHQMSSSVS PSLGLASFDN 240 DPYQIHQTQQ EHRGQVQVQP HQLLQQQQLP QQPQTPQQQQ RAKSEEERSI GPSC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 7e-80 | LBD family protein |