PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT55213.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 120aa MW: 13884.2 Da PI: 9.59 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 27.2 | 4.9e-09 | 14 | 53 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ie + +vtfskR++ ++K +ELS+ + v vi+fss PHT55213.1 14 IECEQAYTVTFSKRKKALFKEKSELSIRPEEVVDVILFSS 53 66677789********************999999999997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence |
MAKKGRQKIV MKLIECEQAY TVTFSKRKKA LFKEKSELSI RPEEVVDVIL FSSGKPCSYG 60 TTCIEKIIDN FFDVKLEDRQ RDHVDVGKSN VFKAFEDLCK ESQALDMKLK QRRIRSCTLA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 4e-11 | M-type_MADS family protein |