PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT54692.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 692aa MW: 71365.5 Da PI: 8.0676

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT54692.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2.1e-05	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PHT54692.1 56 FVCEICNKGFQRDQNLQLHRRGH 78 89*******************88 PP
2	zf-C2H2	16.8	1.9e-05	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+Lk H++ + PHT54692.1 132 WKCDKCSKKYAVQSDLKAHLKIC 154 58******************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence
MNDCVGSGEV SVSSSGDQAA HCKEGGKKKR NLPGMPDPNA EVIALSPKTL LATNRFVCEI 60 CNKGFQRDQN LQLHRRGHNL PWKLRQRESN EVRKRVYVCP EPTCVHHDPS RALGDLTGIK 120 KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH LKICGTKEYK CDCGTMFSRR DSFITHRAFC 180 DVLAKDREKA QDAVTTPISD EDHKVQAVVS STPSPSTPPT PPPASEPPAV PSPAAPESLL 240 PPVTPSTAVV SSDCPIQNSE LVESPRTNSD GTITKQFMEE TKAKSSLSGI CRSSSSIGCT 300 NSNRLASLAG ICSNSSMSSS SKGSTSSSSI FPSLTGICSS TRSSSSNGST SSISVFPSLT 360 GVCSSNRSSS SNVSTSSISI FPSLTGICSS SRSLSSNVST GSISAFPSLT GISSSSRSLS 420 SNGSTPSSSI FASSTGFCSS SSSLSCNRST SSSSNFSSLN GIGSSSSSLN SNGSASCSSF 480 ASLFASSTAS GSLPSQAPHF TDWFQSVAPA PTPDIEPPSS MEPISLCLAM NYGSSVFGPT 540 GQEGMQYAAA PQPAMSATAL LQKAALMGAT STNSSLLRGL GILSSSPSSS GQHEWSGRQI 600 DTDGATVAAG LGLGLPCDDG SGLKELMLGT PSVFGPKHPT LDLLGLGMAA GGGPTPGLSA 660 LITSMGGNLD VAAAAGPFDS GEFCGEELRR SS

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence

MNDCVGSGEV SVSSSGDQAA HCKEGGKKKR NLPGMPDPNA EVIALSPKTL LATNRFVCEI  60
CNKGFQRDQN LQLHRRGHNL PWKLRQRESN EVRKRVYVCP EPTCVHHDPS RALGDLTGIK  120
KHFCRKHGEK KWKCDKCSKK YAVQSDLKAH LKICGTKEYK CDCGTMFSRR DSFITHRAFC  180
DVLAKDREKA QDAVTTPISD EDHKVQAVVS STPSPSTPPT PPPASEPPAV PSPAAPESLL  240
PPVTPSTAVV SSDCPIQNSE LVESPRTNSD GTITKQFMEE TKAKSSLSGI CRSSSSIGCT  300
NSNRLASLAG ICSNSSMSSS SKGSTSSSSI FPSLTGICSS TRSSSSNGST SSISVFPSLT  360
GVCSSNRSSS SNVSTSSISI FPSLTGICSS SRSLSSNVST GSISAFPSLT GISSSSRSLS  420
SNGSTPSSSI FASSTGFCSS SSSLSCNRST SSSSNFSSLN GIGSSSSSLN SNGSASCSSF  480
ASLFASSTAS GSLPSQAPHF TDWFQSVAPA PTPDIEPPSS MEPISLCLAM NYGSSVFGPT  540
GQEGMQYAAA PQPAMSATAL LQKAALMGAT STNSSLLRGL GILSSSPSSS GQHEWSGRQI  600
DTDGATVAAG LGLGLPCDDG SGLKELMLGT PSVFGPKHPT LDLLGLGMAA GGGPTPGLSA  660
LITSMGGNLD VAAAAGPFDS GEFCGEELRR SS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	4e-96	C2H2 family protein