PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT53988.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NAC
Protein Properties Length: 307aa    MW: 35104.6 Da    PI: 7.4492
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT53988.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.73.9e-52131371128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lp+GfrFhPtdeelv++yL++k++g+++++ ++i+e+d+yk++Pw+Lp+k+  +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk+v +   ++
  PHT53988.1  13 LPAGFRFHPTDEELVQHYLCRKCAGQSISV-SIIAEIDLYKFDPWQLPEKALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPVGK--PKT 108
                 799***************************.89***************8777889*************************************98..778 PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                  g+kk Lvfy g+ap+g kt+W+mheyrl
  PHT53988.1 109 LGIKKALVFYAGKAPRGIKTNWIMHEYRL 137
                 ***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MIKGIVGNQQ LGLPAGFRFH PTDEELVQHY LCRKCAGQSI SVSIIAEIDL YKFDPWQLPE  60
KALYGEKEWY FFSPRDRKYP NGSRPNRAAG TGYWKATGAD KPVGKPKTLG IKKALVFYAG  120
KAPRGIKTNW IMHEYRLANV DRSAGKSNNL RLDDWVLCRI YNKKGTLEKY YNVDNKESES  180
FGEFEDEIKP KIFPTQLAPA PGQWPPRPQS TPASDYFNFE TSESMTTTRM HTTNSSSGSE  240
HVLSSCDKEV QSAPKWDDLG TAALDFQINY LDGLLNDPFE IQMQQQNCNI DQFNTFQDMF  300
LYMQKPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-118NAC family protein