PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT53933.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 204aa    MW: 22550.4 Da    PI: 7.5843
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT53933.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260139.88.9e-4421119199
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+lrrkC ++C+++pyfp e+p+kf nvhk+FGasnv+kll++l +++reda++sl+yeAear+rdPvyG+vg i+ lq+q+e+l++el+++++
  PHT53933.1  21 PCAACKFLRRKCLPGCIFSPYFPPEEPQKFINVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAITFLQRQVERLQKELDAANA 119
                 7*********************************************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MLDKNHEVEG LMASSSSYNS PCAACKFLRR KCLPGCIFSP YFPPEEPQKF INVHKIFGAS  60
NVTKLLNELL PHQREDAVNS LAYEAEARVR DPVYGCVGAI TFLQRQVERL QKELDAANAD  120
LIRYACNEFT PPPPPPPLPI HHNVALRQRP AEFSRRSSMG HGGGGGGFHQ TPNFPMPYSL  180
PNWNDHQNPS GDHHYYGGGG GASI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.21e-73LBD family protein