PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT53933.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | LBD | ||||||||
Protein Properties | Length: 204aa MW: 22550.4 Da PI: 7.5843 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 139.8 | 8.9e-44 | 21 | 119 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC ++C+++pyfp e+p+kf nvhk+FGasnv+kll++l +++reda++sl+yeAear+rdPvyG+vg i+ lq+q+e+l++el+++++ PHT53933.1 21 PCAACKFLRRKCLPGCIFSPYFPPEEPQKFINVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAITFLQRQVERLQKELDAANA 119 7*********************************************************************************************99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence |
MLDKNHEVEG LMASSSSYNS PCAACKFLRR KCLPGCIFSP YFPPEEPQKF INVHKIFGAS 60 NVTKLLNELL PHQREDAVNS LAYEAEARVR DPVYGCVGAI TFLQRQVERL QKELDAANAD 120 LIRYACNEFT PPPPPPPLPI HHNVALRQRP AEFSRRSSMG HGGGGGGFHQ TPNFPMPYSL 180 PNWNDHQNPS GDHHYYGGGG GASI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.2 | 1e-73 | LBD family protein |