PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT53498.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 157aa MW: 17953.4 Da PI: 5.162 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.8 | 2.4e-22 | 22 | 71 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ++i+nk qv fskRr ++KKA+ELS+LC+++vavi+ s+ gkly + PHT53498.1 22 EKISNKKSLQVAFSKRRGSLFKKASELSTLCGVQVAVIVESPAGKLYSFG 71 579********************************************995 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence |
MENKEEETSK KKTLGRRKIP IEKISNKKSL QVAFSKRRGS LFKKASELST LCGVQVAVIV 60 ESPAGKLYSF GSPSVDSVID RFEKAREDGL NSCSEAHEEE KGVMEKSNWW WEDVFLENLG 120 LEELEERMSD MQVLKNNLLK RIQDHDDLVM ADSFLNL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-25 | M-type_MADS family protein |