PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT53352.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 439aa MW: 49191.8 Da PI: 8.1041

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT53352.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	49.2	1.6e-15	1	75	17	91
DUF260 17 vlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +++ ++p ++ ++++n++++FG +n +++++++++ r+++++s +yeA+ r++dP++G ++ i+ lqq+l+++k PHT53352.1 1 MFRNHLPPQKDETYKNIEQVFGLANFERFYDRVEPQWRDALIDSYAYEANERIKDPIHGITKDITLLQQRLANTK 75 5899******************************************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
MFRNHLPPQK DETYKNIEQV FGLANFERFY DRVEPQWRDA LIDSYAYEAN ERIKDPIHGI 60 TKDITLLQQR LANTKRLGTA NVLVSGLAAC TVKCTASRTA ATYPYCRRIT VTVNTCAKFC 120 KHIVVAGVKS LTLNDDRMIT QDLLYGNSLI KPNEEFHRDK TIAQVCSESL SKFNSKASIH 180 VLQGDILNFS AADFEKFDTV IISCCSEIKR REVNSRCRQL TDPIAFYSVQ CRGSLAEIFV 240 DLKSHTRLFG QDLKSIMEFC SFEEAIAVPW KILPKGLSEI FLAMRVAENF EATHRTNVGK 300 LSATDFQNLK TFKDVLCDKQ QFNHNHISSA TLEKLIGITA CNIHSIVGAI LAQRFLYLIY 360 IPFNCRDDVV VAVAETPAPA LEEPMDIMTA LQLVLRKSRP NGGLNEGAKV IENHAAQLCV 420 LSKGLGPARL CQIGQSTLC

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

MFRNHLPPQK DETYKNIEQV FGLANFERFY DRVEPQWRDA LIDSYAYEAN ERIKDPIHGI  60
TKDITLLQQR LANTKRLGTA NVLVSGLAAC TVKCTASRTA ATYPYCRRIT VTVNTCAKFC  120
KHIVVAGVKS LTLNDDRMIT QDLLYGNSLI KPNEEFHRDK TIAQVCSESL SKFNSKASIH  180
VLQGDILNFS AADFEKFDTV IISCCSEIKR REVNSRCRQL TDPIAFYSVQ CRGSLAEIFV  240
DLKSHTRLFG QDLKSIMEFC SFEEAIAVPW KILPKGLSEI FLAMRVAENF EATHRTNVGK  300
LSATDFQNLK TFKDVLCDKQ QFNHNHISSA TLEKLIGITA CNIHSIVGAI LAQRFLYLIY  360
IPFNCRDDVV VAVAETPAPA LEEPMDIMTA LQLVLRKSRP NGGLNEGAKV IENHAAQLCV  420
LSKGLGPARL CQIGQSTLC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	1e-12	LBD family protein