PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT52829.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 502aa MW: 55620.4 Da PI: 8.4004

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT52829.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PHT52829.1 87 FVCEICNKGFQRDQNLQLHRRGH 109 89*******************88 PP
2	zf-C2H2	11.5	0.0009	163	185	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ PHT52829.1 163 WKCDKCSKIYAVQSDWKAHSKTC 185 58*****************9998 PP
3	zf-C2H2	11	0.0014	193	211	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++++H + PHT52829.1 193 DCGTIFSRKDSFVTHRAFC 211 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MNPEEMRNKQ IYHQSNIITS SGCFSSQPVI FSEEATSVSS MSQNISIHQQ QQQMQKIKKK 60 RSLPGNPDPD AEVIALSPKT LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRSN 120 KESKKKAYVC PEPTCVHHHP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK IYAVQSDWKA 180 HSKTCGTREY RCDCGTIFSR KDSFVTHRAF CDALAEESAR LSANSALMHR AVIASTIVNS 240 SAIGEPNFHL NQSPLFPYPT NQRHFANPPP PPMAAATTVT THMSLNPWDP QIPLNPNPIT 300 HEEHHNNHNI LHPVPIKTES IHIPFTSSLP FYHEHYYPVI HKGGSFSIPS SPQLSATALL 360 QKAATMGTHS TVSHVNSVMA QLGHHVTPKL SPEGFLSFGS ENMSSNWQKR ENLTRDFLGL 420 TGDHHHDQDH HDESSSAGGG GGGGGFMANG GNGLLSSFGG DGMHDYQDTL YDRDHSMLKH 480 HQLGFGFGAA AAESTTGTWG DC

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MNPEEMRNKQ IYHQSNIITS SGCFSSQPVI FSEEATSVSS MSQNISIHQQ QQQMQKIKKK  60
RSLPGNPDPD AEVIALSPKT LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRSN  120
KESKKKAYVC PEPTCVHHHP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK IYAVQSDWKA  180
HSKTCGTREY RCDCGTIFSR KDSFVTHRAF CDALAEESAR LSANSALMHR AVIASTIVNS  240
SAIGEPNFHL NQSPLFPYPT NQRHFANPPP PPMAAATTVT THMSLNPWDP QIPLNPNPIT  300
HEEHHNNHNI LHPVPIKTES IHIPFTSSLP FYHEHYYPVI HKGGSFSIPS SPQLSATALL  360
QKAATMGTHS TVSHVNSVMA QLGHHVTPKL SPEGFLSFGS ENMSSNWQKR ENLTRDFLGL  420
TGDHHHDQDH HDESSSAGGG GGGGGFMANG GNGLLSSFGG DGMHDYQDTL YDRDHSMLKH  480
HQLGFGFGAA AAESTTGTWG DC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-109	C2H2 family protein