PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT52801.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 522aa MW: 57001.1 Da PI: 7.8443

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT52801.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.8	1.3e-11	160	184	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++++t tCk+Gd+CkF H+ PHT52801.1 160 GEKDCAHYMQTRTCKFGDSCKFDHP 184 7889********************8 PP
2	zf-CCCH	37	5.6e-12	209	235	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++t Ck+G+rCkF+H++ PHT52801.1 209 PGEPECPYFMKTQKCKFGNRCKFNHPK 235 5799*********************96 PP
3	zf-CCCH	36.2	9.8e-12	258	282	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f+++tGtCk+G +CkF+H++ PHT52801.1 258 EPSCTFYLKTGTCKFGVTCKFHHPR 282 577********************96 PP
4	zf-CCCH	37.2	4.8e-12	332	358	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tG CkyG++C+++H++ PHT52801.1 332 PGEVDCPFYLKTGSCKYGGTCRYNHPE 358 57899********************96 PP
5	zf-CCCH	43	7.7e-14	413	436	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+f+++tG+CkyG+rCkF+H+ PHT52801.1 413 QIECDFYMKTGECKYGERCKFHHP 436 568********************9 PP
6	zf-CCCH	37.4	4.2e-12	470	491	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tG CkyG++CkF H+p PHT52801.1 470 CPYYMKTGMCKYGATCKFDHPP 491 ********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MANQLYGYNP SSIAGMAGSN LARTTTRSMD DYLSADNKTL LGSSSYFTSS GYSFPSSSPS 60 MLFNQSDSYT PTASRIPGLA TQSSYGPPGV DVTQPSAVVA ADSYFSSLKR SSSDALYHQT 120 LLGARNTIGQ AEAWFSANPL AKRPRFESAS NLSIYPQRPG EKDCAHYMQT RTCKFGDSCK 180 FDHPIWVPEG GIPDWKEVPV TTESLPERPG EPECPYFMKT QKCKFGNRCK FNHPKDNTTY 240 LGSVQNSGVS DLPERPSEPS CTFYLKTGTC KFGVTCKFHH PRDIQLPAPE QENGSVGNPG 300 SANYEMTEDV NLVKPLSVPA LLHNSKGLPI RPGEVDCPFY LKTGSCKYGG TCRYNHPERN 360 AAGIGPALVA SPATHWNIGM INPAASLLQN FDPRLTQTML GLLPPVYPQR PGQIECDFYM 420 KTGECKYGER CKFHHPLDRS APVVSAKDVQ QPNVKLTLAG LPRREGAVHC PYYMKTGMCK 480 YGATCKFDHP PPGEVLGMST SQGTSSSFEA EDSVNVNESQ RS

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MANQLYGYNP SSIAGMAGSN LARTTTRSMD DYLSADNKTL LGSSSYFTSS GYSFPSSSPS  60
MLFNQSDSYT PTASRIPGLA TQSSYGPPGV DVTQPSAVVA ADSYFSSLKR SSSDALYHQT  120
LLGARNTIGQ AEAWFSANPL AKRPRFESAS NLSIYPQRPG EKDCAHYMQT RTCKFGDSCK  180
FDHPIWVPEG GIPDWKEVPV TTESLPERPG EPECPYFMKT QKCKFGNRCK FNHPKDNTTY  240
LGSVQNSGVS DLPERPSEPS CTFYLKTGTC KFGVTCKFHH PRDIQLPAPE QENGSVGNPG  300
SANYEMTEDV NLVKPLSVPA LLHNSKGLPI RPGEVDCPFY LKTGSCKYGG TCRYNHPERN  360
AAGIGPALVA SPATHWNIGM INPAASLLQN FDPRLTQTML GLLPPVYPQR PGQIECDFYM  420
KTGECKYGER CKFHHPLDRS APVVSAKDVQ QPNVKLTLAG LPRREGAVHC PYYMKTGMCK  480
YGATCKFDHP PPGEVLGMST SQGTSSSFEA EDSVNVNESQ RS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein