PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT52796.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

SBP

Protein Properties

Length: 369aa MW: 39540.2 Da PI: 8.4786

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT52796.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	137.3	4.4e-43	70	145	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegCe+dls++k y++rhkvC +hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ PHT52796.1 70 RCQVEGCETDLSDVKAYYSRHKVCGAHSKSPMVIVAGLEQRFCQQCSRFHRLPEFDQGKRSCRRRLAGHNERRRKP 145 6*************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
MELGSASSTS PDSPNGLKFG EKVYFEHVGD VGAHHKSTTG SPPVSGGGQP SQSPSTAKKG 60 RGGGLVQGRR CQVEGCETDL SDVKAYYSRH KVCGAHSKSP MVIVAGLEQR FCQQCSRFHR 120 LPEFDQGKRS CRRRLAGHNE RRRKPPPGSL LSTRYGSLSS SIFENNSRSG SFLVDFAIYP 180 NLTEVTWSNT RTSVRGWDNQ ATASGKFLQS PWLNSSENST SDLILQGSAG SASNSGPSIP 240 SGNCFPGVSD SSGALSLLSN ESWGSRNQPS SLGVNSLVNT DDGYNIQPSG SHAVHVNHYS 300 GPQWGSKGNE GSSSSHSRPP NLGLDQIYHD AVNQYSAETG KALHSGRQFM ELDHSKGYDS 360 SVQDVQWTL

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

MELGSASSTS PDSPNGLKFG EKVYFEHVGD VGAHHKSTTG SPPVSGGGQP SQSPSTAKKG  60
RGGGLVQGRR CQVEGCETDL SDVKAYYSRH KVCGAHSKSP MVIVAGLEQR FCQQCSRFHR  120
LPEFDQGKRS CRRRLAGHNE RRRKPPPGSL LSTRYGSLSS SIFENNSRSG SFLVDFAIYP  180
NLTEVTWSNT RTSVRGWDNQ ATASGKFLQS PWLNSSENST SDLILQGSAG SASNSGPSIP  240
SGNCFPGVSD SSGALSLLSN ESWGSRNQPS SLGVNSLVNT DDGYNIQPSG SHAVHVNHYS  300
GPQWGSKGNE GSSSSHSRPP NLGLDQIYHD AVNQYSAETG KALHSGRQFM ELDHSKGYDS  360
SVQDVQWTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	2e-49	SBP family protein