PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT52532.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | LBD | ||||||||
Protein Properties | Length: 176aa MW: 19618.1 Da PI: 5.7855 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.2 | 2.4e-42 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+l+r+C+++C +apyf +++pkkfanvhk+FGasnv+k+l+++pe++red+++slvyeAe+r+rdPvyG++g i +lq+++ +l+++l ++++ PHT52532.1 11 SCAACKFLKRRCTPNCQFAPYFRSDEPKKFANVHKVFGASNVIKILNEVPEDQREDTVNSLVYEAEVRLRDPVYGCIGAIASLQRKMVELQQDLMVTRA 109 6********************************************************************************************999887 PP DUF260 100 e 100 + PHT52532.1 110 H 110 6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence |
MKSNEPRSSS SCAACKFLKR RCTPNCQFAP YFRSDEPKKF ANVHKVFGAS NVIKILNEVP 60 EDQREDTVNS LVYEAEVRLR DPVYGCIGAI ASLQRKMVEL QQDLMVTRAH LAYYEAKPSS 120 TASNCPLLDY DPLSVNMPSV FVDTSVSGGY LDSFSQNSFA MDQSGSTNEF GQFPFP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 4e-60 | LBD family protein |