PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PHT52480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 272aa MW: 30561.4 Da PI: 7.9386 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 7.8e-20 | 123 | 173 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k +r++lg+f+ta +Aaka+++a+ kl+g PHT52480.1 123 HYRGVRQRP-WGKFAAEIRDP---NrKGTRVWLGTFDTAVDAAKAYDRAAFKLRG 173 8********.**********9...6566*************************98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 272 aa Download sequence |
MGSPQENCSF DMIRQHLDDI SLMEYYCPEN TLYSQSCESL DQTSVSFETS SNLDDISSFF 60 SSSKTDFGCF EFETKPITSA AASISSNSPK KRSFNERKPS LNIAVPVKPV VVQKVEVVRE 120 KKHYRGVRQR PWGKFAAEIR DPNRKGTRVW LGTFDTAVDA AKAYDRAAFK LRGSKAILNF 180 PLEVANFKQQ NSTVEVPQQV NSSGSKRARE KEELAINKEM KIEEEERVAQ TAPLTPSNWS 240 TIWDSGNGKG IFEVPPLSPL SPHMSYSQLV MI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G51190.1 | 2e-43 | ERF family protein |