PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT52324.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | YABBY | ||||||||
Protein Properties | Length: 196aa MW: 22528.4 Da PI: 8.6006 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 195.7 | 2e-60 | 12 | 162 | 7 | 170 |
YABBY 7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsene 105 eq+Cy+ CnfCn +lavsvP + lf +vtvrCGhCt+l svn+a a+ ++ + + + ++++++ + +++ ++++++ s+s ++n+ PHT52324.1 12 YEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCTNLWSVNMAAAAVFQSNSWQ---NHHNHIHQVANYTNSPHDQYKMNFGSSSI-------TNNS 100 69****************************************99887765554443...23334444433333333333333332222.......2222 PP YABBY 106 deevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++e v+rPPekrqr Psayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+ihfgl PHT52324.1 101 TREER---IVNRPPEKRQRGPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGL 162 22222...389****************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence |
MSSSYIIDST NYEQLCYIPC NFCNIVLAVS VPCSNLFDIV TVRCGHCTNL WSVNMAAAAV 60 FQSNSWQNHH NHIHQVANYT NSPHDQYKMN FGSSSITNNS TREERIVNRP PEKRQRGPSA 120 YNQFIKEEIQ RIKANNPDIT HREAFSTAAK NWAHFPHIHF GLMLETDNQA KLPANENKEK 180 HIMHRAPLPK IKTFTF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.1 | 8e-81 | YABBY family protein |