PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT52118.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GATA

Protein Properties

Length: 540aa MW: 60388.4 Da PI: 7.0839

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT52118.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	58.9	6.5e-19	142	175	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk + PHT52118.1 142 CSDCNTTKTPLWRSGPKGPKSLCNACGIRQRKAR 175 *******************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MNIPTYTNSS SSSFPFELNN NEVQYDLSQY NSYQFASSSS NSSCQNFFNI STTNIHDQSG 60 YDHFHSQFHQ PQHQHEVDNF GSRSSGSHDQ LEKKNKGLKL TLWKNKGVQK LKNNNLDYTN 120 SKLKLEDQND YNNNNIIPIR VCSDCNTTKT PLWRSGPKGP KSLCNACGIR QRKARRAAAA 180 AAAATNGTNV SSTETSSTIT TAITTTTKVK VQQQKNKTTK VNTNHVVPFK KRCKFLSTTT 240 TAPAATVTAT AHCTLVGSSS SSSSYNNNNN NNTNQKQKLC FEDFFVNLSN NLAIHRVFPQ 300 DEKEAAILLM ALSSGLVHVC SEGFCVIGGY MPPVNDASKK KSLISAEHRV AMCELACKSS 360 EFVMTDRWES LIESHDEDLG ESGRAEIDED NIYFGESVWI YPRALERSLE VSGVPVTYLR 420 SIKDMYEGAK TQVRTAGGDS EHFLILTGLH QGSTLSPFLF AVVMDVLTQH IHGEVPWCML 480 FADDVVLIDE TREGVNDKLE VWRQILESKG FRLSRSETEY MECKFNDLRQ EDDRVVRFGS

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MNIPTYTNSS SSSFPFELNN NEVQYDLSQY NSYQFASSSS NSSCQNFFNI STTNIHDQSG  60
YDHFHSQFHQ PQHQHEVDNF GSRSSGSHDQ LEKKNKGLKL TLWKNKGVQK LKNNNLDYTN  120
SKLKLEDQND YNNNNIIPIR VCSDCNTTKT PLWRSGPKGP KSLCNACGIR QRKARRAAAA  180
AAAATNGTNV SSTETSSTIT TAITTTTKVK VQQQKNKTTK VNTNHVVPFK KRCKFLSTTT  240
TAPAATVTAT AHCTLVGSSS SSSSYNNNNN NNTNQKQKLC FEDFFVNLSN NLAIHRVFPQ  300
DEKEAAILLM ALSSGLVHVC SEGFCVIGGY MPPVNDASKK KSLISAEHRV AMCELACKSS  360
EFVMTDRWES LIESHDEDLG ESGRAEIDED NIYFGESVWI YPRALERSLE VSGVPVTYLR  420
SIKDMYEGAK TQVRTAGGDS EHFLILTGLH QGSTLSPFLF AVVMDVLTQH IHGEVPWCML  480
FADDVVLIDE TREGVNDKLE VWRQILESKG FRLSRSETEY MECKFNDLRQ EDDRVVRFGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56860.1	2e-20	GATA family protein