PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT51568.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 745aa    MW: 82810.1 Da    PI: 5.4186
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT51568.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.41.6e-2050106157
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                 r++ +++t++q++eLe++F+ +++p+ ++r+eL++ lgL+  q+k+WFqN+R+++k+
  PHT51568.1  50 RKRYHRHTQHQIQELEAYFKDCPHPDDKQRKELSRVLGLDPLQIKFWFQNKRTQMKN 106
                 789999************************************************995 PP
2START189.61.6e-592624822206
                 HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 la+ a++e+v++a  +ep+W++s      + +n++e+ + f+++ +     +++ea+r++++v+m++ +lve+l++ +  W+  +a    +a+t++v+s
  PHT51568.1 262 LALVAMEEFVQMAHMKEPLWFSSNidngtSLLNEEEYFRFFPRGIGprpigFNTEASRDTAIVIMNPINLVEILMEAN-HWSSLFAnivsRASTIDVLS 359
                 67889*********************99999************999********************************.88888888888********* PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                 ++      ga q+++ae+q++sp vp R+ +fvRy+r   +g+w+++dvS+d+ +         R++++pSg+li++++ng+skvtwvehv++++ l+h
  PHT51568.1 360 TAvggnynGAMQVIFAEFQVPSPQVPtRECYFVRYCRHRADGTWAVMDVSLDQIRAGAP----LRCRRRPSGCLIQELPNGYSKVTWVEHVEVDDTLVH 454
                 ********************************************************997....9*********************************** PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                 +++++lv+sgla+ga++w atl+rqce+
  PHT51568.1 455 NIYKPLVSSGLAFGAQRWIATLDRQCER 482
                 **************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    
MIDVQVHSLD ISNNTSESDV PQDIGTKSGN SGGDADHAEQ DEDANNSRKR KRYHRHTQHQ  60
IQELEAYFKD CPHPDDKQRK ELSRVLGLDP LQIKFWFQNK RTQMKNQHER HENTHLRAEN  120
EKFKSEVMRY REALGNVSCP NCGVGQPQRV LINEMSFDER QLRLENARLR EEIVRITSEA  180
GRYVGRSLFQ NTTFQNNHNG YNSPTPADFG VLPPYSTPQS VVDGGEAFNN NNEVDIVDHQ  240
DISIMSSMIA PTEVEKQFII ELALVAMEEF VQMAHMKEPL WFSSNIDNGT SLLNEEEYFR  300
FFPRGIGPRP IGFNTEASRD TAIVIMNPIN LVEILMEANH WSSLFANIVS RASTIDVLST  360
AVGGNYNGAM QVIFAEFQVP SPQVPTRECY FVRYCRHRAD GTWAVMDVSL DQIRAGAPLR  420
CRRRPSGCLI QELPNGYSKV TWVEHVEVDD TLVHNIYKPL VSSGLAFGAQ RWIATLDRQC  480
ERLASALATY SPTNSVTDMV LSTQESRRSM MKLAERMVNS FGSGVSASVG NHWTTLATGS  540
GTDENVRIMT RKSVDDPGRP PGVVLSAATS FWLPVPPKMV FDYLRDESRR TEWDILSNGG  600
TIEEMAHIAN GRETGNCVSL LKVHGQTESQ SNMLILQECS TDLTGSFVIY APIDINSMNV  660
VLNGGDPDFV ALLPSGFAIL PDGPPAGNCR GAYNDGSGGS LLTVAFQILV NSVPTARLSL  720
GSVATVNNLI SCTVDRIKGS LFPEA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0HD-ZIP family protein