PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT51231.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 227aa MW: 26233.9 Da PI: 9.8689

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT51231.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.6	7.9e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++nrqvt+skRrng++KKA+EL vLCda+v+++++sstgkl+e++s PHT51231.1 9 KKIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIVMISSTGKLHEFIS 59 68***********************************************86 PP
2	K-box	95.5	8.6e-32	71	169	1	99
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 yqk+ g++l+++++e++q++l+kLk+ ++nL++e+R+++Ge+L++L++++L++L +++++slk iR++K++++ +qie+ +kk ++++e++++L +++ PHT51231.1 71 YQKTVGVDLWNSHYEKMQEQLRKLKDVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVIGNQIETYKKKVRNVEEIHRNLLLEFD 169 899999***************************************************************************************987765 PP

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence
MARGKIQIKK IENQTNRQVT YSKRRNGLFK KANELTVLCD AKVSIVMISS TGKLHEFISP 60 SITTKQLFDL YQKTVGVDLW NSHYEKMQEQ LRKLKDVNRN LRKEIRQRMG ESLNDLNYEQ 120 LEELMENVDN SLKLIRERKY KVIGNQIETY KKKVRNVEEI HRNLLLEFDA RQEDPYGGLV 180 EQEGDYNSVL GFPNGGGARI LALRLQPNHH HHLHSGGGSD ITTFGLG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	1e-88	MIKC_MADS family protein