PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT51228.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

SRS

Protein Properties

Length: 376aa MW: 40418.1 Da PI: 8.7361

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT51228.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	226.4	5.5e-70	147	299	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrelkskkqsalsstklss 93 +g+++CqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqqql++++++++ ++ +++ +k + +++ ++s +l++ PHT51228.1 147 TGGMNCQDCGNQAKKDCSHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLTSLQQQQNLQQtqllslraDSNIPK-----RPRENPSSSLVRLPN 240 6899***************************************************9999888845554322222222.....345667778888999 PP DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++s el + +P+evss+avfrcv+vs+vdd+++++aY+tav+igGh+fkGiLydqG+e PHT51228.1 241 NSSGLELGGH-FPSEVSSQAVFRCVKVSAVDDADDQYAYHTAVNIGGHLFKGILYDQGPE 299 9988888776.*********************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MSGFFTLGGS GGGGNKGSHH QQQQQQEQDQ LGNNSFLLFK DEEIYNKGFE LWQQYYQLHQ 60 QQRTHPSPHH HLQQQHHQDV DFSVGVGPSS NRRIISTGSS SSSGGNNNVI AGGDHNNYSA 120 LNNSSSFRSS SGFRVIRASS TSGGGATGGM NCQDCGNQAK KDCSHMRCRT CCKSRGFQCQ 180 THVKSTWVPA AKRRERQQQL TSLQQQQNLQ QTQLLSLRAD SNIPKRPREN PSSSLVRLPN 240 NSSGLELGGH FPSEVSSQAV FRCVKVSAVD DADDQYAYHT AVNIGGHLFK GILYDQGPEG 300 RYSGGGGGGG GESSSGSGAA QQALNFITGA TTSTTAAATT SHHHHQPPVT VFDSSVYPAP 360 ITAFLAGTQF FPPPRP

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MSGFFTLGGS GGGGNKGSHH QQQQQQEQDQ LGNNSFLLFK DEEIYNKGFE LWQQYYQLHQ  60
QQRTHPSPHH HLQQQHHQDV DFSVGVGPSS NRRIISTGSS SSSGGNNNVI AGGDHNNYSA  120
LNNSSSFRSS SGFRVIRASS TSGGGATGGM NCQDCGNQAK KDCSHMRCRT CCKSRGFQCQ  180
THVKSTWVPA AKRRERQQQL TSLQQQQNLQ QTQLLSLRAD SNIPKRPREN PSSSLVRLPN  240
NSSGLELGGH FPSEVSSQAV FRCVKVSAVD DADDQYAYHT AVNIGGHLFK GILYDQGPEG  300
RYSGGGGGGG GESSSGSGAA QQALNFITGA TTSTTAAATT SHHHHQPPVT VFDSSVYPAP  360
ITAFLAGTQF FPPPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	4e-62	SRS family protein