PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT50927.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TALE

Protein Properties

Length: 366aa MW: 41518.2 Da PI: 6.3666

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT50927.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.4e-09	293	327	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++e+ LA+++gL+++q+ +WF N+R ++ PHT50927.1 293 KWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 327 569*****************************885 PP
2	ELK	37.9	3.8e-13	247	268	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKYsgyL+sLkqE+s PHT50927.1 247 ELKNHLLRKYSGYLSSLKQELS 268 9*******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MENNYSNNQV GQNSSERGHF FYGTSHQVVG AAPNYGSGGR NSGGGSGGDC YDPMIVKTEG 60 GSTSHHHHHT FHYPSIIRHH NQTVQNHQES TETSASVGGE VLEALKAKII AHPQCSNLLD 120 AYMDCQKVGA PPEVVARLSA VRQEFEVRQR VSLTDRDVSK DPELDQFMEA YYDMLVKYRE 180 ELTRPLQEAM EFMQKIEAQL NMLGNAPVRI FNSEDKCEGV GSSEEDQDNS GGETELPEID 240 PRAEDRELKN HLLRKYSGYL SSLKQELSKK KKKGKLPKDA RQKLLTWWDL HYKWPYPSES 300 EKVALAESTG LDQKQINNWF INQRKRHWKP SEDMQFMVMD GLHPQSAAAL YMEGHYMGEG 360 PFRLGQ

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MENNYSNNQV GQNSSERGHF FYGTSHQVVG AAPNYGSGGR NSGGGSGGDC YDPMIVKTEG  60
GSTSHHHHHT FHYPSIIRHH NQTVQNHQES TETSASVGGE VLEALKAKII AHPQCSNLLD  120
AYMDCQKVGA PPEVVARLSA VRQEFEVRQR VSLTDRDVSK DPELDQFMEA YYDMLVKYRE  180
ELTRPLQEAM EFMQKIEAQL NMLGNAPVRI FNSEDKCEGV GSSEEDQDNS GGETELPEID  240
PRAEDRELKN HLLRKYSGYL SSLKQELSKK KKKGKLPKDA RQKLLTWWDL HYKWPYPSES  300
EKVALAESTG LDQKQINNWF INQRKRHWKP SEDMQFMVMD GLHPQSAAAL YMEGHYMGEG  360
PFRLGQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	45	GGRNSGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08150.1	1e-136	TALE family protein