PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT50821.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 27295.2 Da    PI: 5.1228
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT50821.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.95.6e-28959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                k+i+n + rqvtfskRr g++KKAeELSvLCda+va++ifsstgkl+e++s
  PHT50821.1  9 KKIDNITARQVTFSKRRRGLFKKAEELSVLCDADVALVIFSSTGKLFEFAS 59
                68***********************************************86 PP

2K-box49.12.4e-17951712399
       K-box  23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 +L k++    re+R+l Ge+Le Lsl+eLqq+e++Le + +++ + K   ++++i++lq+k  el eenk+L++k+e
  PHT50821.1  95 RLSKQVADKTRELRQLRGEELEGLSLEELQQIEKKLEAGFSRVLEIKGTRIMDEISNLQRKGAELMEENKQLKQKME 171
                 78888888899***************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MAREKIKIKK IDNITARQVT FSKRRRGLFK KAEELSVLCD ADVALVIFSS TGKLFEFASS  60
SMNDILGKYK LQTSSHEKVD QPSLDLQLEN SLNMRLSKQV ADKTRELRQL RGEELEGLSL  120
EELQQIEKKL EAGFSRVLEI KGTRIMDEIS NLQRKGAELM EENKQLKQKM EMMREGKLPL  180
LTDMDCMVME EGQSSDSIIT TNNVCSSNSG PPPEDDSSNA SLKLGCNNGP AVEDDCSITS  240
LKLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.16e-70MIKC_MADS family protein