PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT50180.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 487aa    MW: 54077.6 Da    PI: 7.2382
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT50180.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.88.1e-32201257259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +DgynWrKYGqK+vk se+prsYY+Ct+a+Cpv+kkvers  d++v+eitY+g+Hnhe
  PHT50180.1 201 SDGYNWRKYGQKMVKASECPRSYYKCTHAKCPVRKKVERSV-DGHVTEITYKGHHNHE 257
                 7****************************************.***************7 PP
2WRKY105.33.2e-33374432159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDg++WrKYGqK+vkg+++prsYYrCt++gC+v+k+ver+++dpk+v++tYeg+Hnhe
  PHT50180.1 374 LDDGFKWRKYGQKVVKGNHHPRSYYRCTYPGCNVRKHVERASTDPKAVITTYEGKHNHE 432
                 59********************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    
MGEKLKVPAV SALPALTIPP RETFFGGGNM SYFSPGPITL VSSYFSESEH PSFSQLLAGA  60
MASPLAKPLL TKEEEANCKE GNLGYKQNRP MSLMVAHSPF FTPFSPSGLL NSPAFLSPLQ  120
SPFGMSHQQA LAHVTAQAAL SQSYLQGTSA QVLGTFDLDE SSLQPQLDTM PSDQQIKKFE  180
LPQISQSEEK PYLNSVDKPA SDGYNWRKYG QKMVKASECP RSYYKCTHAK CPVRKKVERS  240
VDGHVTEITY KGHHNHELPQ SNKRRRDSGA QDGSDCSKAN PEIETHTEIE TSGLNGAHLA  300
HSEQVSTERA SEPPVLKDCD EIVDTATATG KEHDDEPNVK RMKTTVETPI LFSSHKAESE  360
SKIVVQTRSE VDILDDGFKW RKYGQKVVKG NHHPRSYYRC TYPGCNVRKH VERASTDPKA  420
VITTYEGKHN HESPIARNRS HSAAQDSICQ LNEQEIATWR PSLHEKVTLH ANEIPVCRQL  480
KDEHMAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-122WRKY family protein