PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT50091.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 263aa MW: 30641.3 Da PI: 9.3042

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT50091.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	38.2	4e-12	3	45	58	100
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +sslvye +ar+r+PvyG+vg i+ l++q++ql+ +la++++e PHT50091.1 3 LSSLVYEENARVRNPVYGCVGAISFLHNQVSQLQIQLAVAQAE 45 68************************************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence
MQLSSLVYEE NARVRNPVYG CVGAISFLHN QVSQLQIQLA VAQAEILCIQ MQQEPVPCNS 60 PTTLMEPDQL DKLPFSTSNY NSTNKNFNNN LQKYLSFASS SSSIMQDPLA RYFGVVYWHV 120 GRVQLIIEEG KREFEAAYSA SFYPCMEILY ECYEDVAAGS EIRSVVFAGC RFYVAKMRML 180 RWTCGLTRGD RVRNEIIWEK VRVASVEDKM REVRLRWFGH VMRRGTNAPV RRYERLALAG 240 FKWGRGRPKK YWREVIRRDM EQL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	7e-25	LBD family protein