PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT49871.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-X1

Protein Properties

Length: 1134aa MW: 122860 Da PI: 8.1283

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT49871.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	18.4	4.6e-06	333	351	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C+k+CH GpC+ C+ PHT49871.1 333 CGRHRCEKTCHVGPCGHCQ 351 ******************7 PP
2	zf-NF-X1	16.2	2.4e-05	397	414	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C +lCH+GpC+ C PHT49871.1 397 CGNHICRELCHPGPCGDC 414 ****************99 PP
3	zf-NF-X1	17.9	6.7e-06	455	472	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H C++ CH G+C pC PHT49871.1 455 CGVHLCEAVCHSGDCAPC 472 ****************** PP
4	zf-NF-X1	18.6	4.2e-06	551	569	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C++lCH G CppC PHT49871.1 551 CGQHSCESLCHSGHCPPCL 569 ******************6 PP
5	zf-NF-X1	17	1.3e-05	661	676	1	16
zf-NF-X1 1 CGkHkCqklCHeGpCp 16 CG H C ++CH+ pC+ PHT49871.1 661 CGLHACARTCHPSPCD 676 ***************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 1134 aa Download sequence
MSFPAQNNRR NNNNNSNHRP GRNSNNNNNS NPVQGGGARR EWVARGSNVT NTVSFSPAPI 60 AAVVIPGFGV DVSTSGGNGR ENENVAVGQV NRNRNQGYVE PKFNRGVYGN QRRERGRGRE 120 GYNNYQENRV ERAVRGRVNE ERVKDPNLPQ LVQEIEEKLL KGNVECMICY DIVRRSAAMW 180 SCSSCYSIFH LSCIKKWARA PTSVDTSADK NQGFNWRCPG CQSVQLTSSR DIRYVCFCGK 240 RQEPPSDLYL TPHSCGEPCG KKLEKELPGD GLSEEDLCPH VCVLQCHPGP CPPCKAFAPA 300 RSCPCGKEVI TTRCSDRKSV LTCGQQCGKF LDCGRHRCEK TCHVGPCGHC QIVVNACCFC 360 KKKTEAVLCG DMGVTGDIKM ENGVFSCNSA CENKLNCGNH ICRELCHPGP CGDCALLPSN 420 IKTCCCGKTR LEEERHSCLY PIPTCSKVCG KSLRCGVHLC EAVCHSGDCA PCLVPVTQRC 480 RCGSTSRTVE CYKTQSEDEK FTCDRPCGQK KNCGRHRCSE RCCPLSNPKN SITDGWNPHF 540 CSMPCEKKLR CGQHSCESLC HSGHCPPCLE TIFTDLTCAC GRTSIPPPLP CGTPLPSCQL 600 PCSVSQPCGH PPTHSCHFGD CLPCAVPVAK ECVGGHVILR NIPCGSKDIR CNKICGKTRQ 660 CGLHACARTC HPSPCDATAG PSNGSRASCG QTCGAPRRDC RHTCSALCHP FSPCPDVRCE 720 FPVTITCSCG RITANVPCDA GGQVVDHVFE ASIIQKLPSP LQPIETNGKK VPLGQRKIIC 780 DDECAKMEKK KVLSDAFGIT PPNLEALHFG ENAAVSEVLG DLLRRDAKWV LSIEERCKFL 840 VLGRSRGGVN ALKVHVFCPM SKEKRDSVRL IAARWKLSVN AAGWEPKRFI VIHVTPKSKA 900 PTRILGAKGC TVNNIAQPAV FDTLVDMDPR LVVALFDLPR DADISALVLR FGGECELVWL 960 NDKNALAVFS DPARAATAMR RLDQGSAYCG AAVVPQSGVA SAGAAATNVW GVAGAVKDGG 1020 GVAALKGNPW KKAVVQEPHL RESPWDAEEW SKNPNDLAVA PSAWRVNEAP STASSNRWSI 1080 LEPEITSSLP RASITMKEPI SLPEGSGSVP SPKSQHVGVG DMADVVDDWD KAYD

Sequence ? help Back to Top

Protein Sequence Length: 1134 aa Download sequence

MSFPAQNNRR NNNNNSNHRP GRNSNNNNNS NPVQGGGARR EWVARGSNVT NTVSFSPAPI  60
AAVVIPGFGV DVSTSGGNGR ENENVAVGQV NRNRNQGYVE PKFNRGVYGN QRRERGRGRE  120
GYNNYQENRV ERAVRGRVNE ERVKDPNLPQ LVQEIEEKLL KGNVECMICY DIVRRSAAMW  180
SCSSCYSIFH LSCIKKWARA PTSVDTSADK NQGFNWRCPG CQSVQLTSSR DIRYVCFCGK  240
RQEPPSDLYL TPHSCGEPCG KKLEKELPGD GLSEEDLCPH VCVLQCHPGP CPPCKAFAPA  300
RSCPCGKEVI TTRCSDRKSV LTCGQQCGKF LDCGRHRCEK TCHVGPCGHC QIVVNACCFC  360
KKKTEAVLCG DMGVTGDIKM ENGVFSCNSA CENKLNCGNH ICRELCHPGP CGDCALLPSN  420
IKTCCCGKTR LEEERHSCLY PIPTCSKVCG KSLRCGVHLC EAVCHSGDCA PCLVPVTQRC  480
RCGSTSRTVE CYKTQSEDEK FTCDRPCGQK KNCGRHRCSE RCCPLSNPKN SITDGWNPHF  540
CSMPCEKKLR CGQHSCESLC HSGHCPPCLE TIFTDLTCAC GRTSIPPPLP CGTPLPSCQL  600
PCSVSQPCGH PPTHSCHFGD CLPCAVPVAK ECVGGHVILR NIPCGSKDIR CNKICGKTRQ  660
CGLHACARTC HPSPCDATAG PSNGSRASCG QTCGAPRRDC RHTCSALCHP FSPCPDVRCE  720
FPVTITCSCG RITANVPCDA GGQVVDHVFE ASIIQKLPSP LQPIETNGKK VPLGQRKIIC  780
DDECAKMEKK KVLSDAFGIT PPNLEALHFG ENAAVSEVLG DLLRRDAKWV LSIEERCKFL  840
VLGRSRGGVN ALKVHVFCPM SKEKRDSVRL IAARWKLSVN AAGWEPKRFI VIHVTPKSKA  900
PTRILGAKGC TVNNIAQPAV FDTLVDMDPR LVVALFDLPR DADISALVLR FGGECELVWL  960
NDKNALAVFS DPARAATAMR RLDQGSAYCG AAVVPQSGVA SAGAAATNVW GVAGAVKDGG  1020
GVAALKGNPW KKAVVQEPHL RESPWDAEEW SKNPNDLAVA PSAWRVNEAP STASSNRWSI  1080
LEPEITSSLP RASITMKEPI SLPEGSGSVP SPKSQHVGVG DMADVVDDWD KAYD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	0.0	NF-X1 family protein