PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT49863.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 531aa MW: 57465.1 Da PI: 5.2065

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT49863.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.1	2.4e-11	341	383	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+++L PHT49863.1 341 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLREL 383 79*******************66......*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence
MLSEMNGIGW MDGKDDEGND TWPVQQNNNG NNENHQNGVM GNKDDMEIGA LSTFKSMMEA 60 EDVHWYNMNS NQNNNGGGGN IMQSHHHDIN MSFAPNFNEV DNNNLLPVDS SSSCSPSPGF 120 NSLDPSQVNF FMPPKPTIPP LLSGLDSSFD LGGFHDLSSH NQMGHNSVTS FPQFACSNML 180 PMPQATGGFG SIGFGVNPGN ESVGNSLILN RSKLLKPLDN FASIGAQPTL FQKRAALRKN 240 LGNIGGKLGV LGAEIGQSSS NKEVNEANER KRKFSNGDDL DDLSVDGSTL NYDSDDFVEN 300 SATMVEESTK TGGNSSNTTS TVTTGVDQKG KKKGLPAKNL MAERRRRKKL NDRLYMLRSV 360 VPKISKMDRA SILGDAIEYL RELLQTINDL HNELEATPPA SSSLTQASSF YPLTPTTQAL 420 PGRIKEELCA SSFASPLSSP TGQPARVEVR AREGRAVNIH MFCSRKPGLL LSTMRALDNL 480 GLDVQQAVIS CFNGFALDIF RAEQSNEGQD IPPEQIKAVL LDSAGFHGGM I

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence

MLSEMNGIGW MDGKDDEGND TWPVQQNNNG NNENHQNGVM GNKDDMEIGA LSTFKSMMEA  60
EDVHWYNMNS NQNNNGGGGN IMQSHHHDIN MSFAPNFNEV DNNNLLPVDS SSSCSPSPGF  120
NSLDPSQVNF FMPPKPTIPP LLSGLDSSFD LGGFHDLSSH NQMGHNSVTS FPQFACSNML  180
PMPQATGGFG SIGFGVNPGN ESVGNSLILN RSKLLKPLDN FASIGAQPTL FQKRAALRKN  240
LGNIGGKLGV LGAEIGQSSS NKEVNEANER KRKFSNGDDL DDLSVDGSTL NYDSDDFVEN  300
SATMVEESTK TGGNSSNTTS TVTTGVDQKG KKKGLPAKNL MAERRRRKKL NDRLYMLRSV  360
VPKISKMDRA SILGDAIEYL RELLQTINDL HNELEATPPA SSSLTQASSF YPLTPTTQAL  420
PGRIKEELCA SSFASPLSSP TGQPARVEVR AREGRAVNIH MFCSRKPGLL LSTMRALDNL  480
GLDVQQAVIS CFNGFALDIF RAEQSNEGQD IPPEQIKAVL LDSAGFHGGM I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	331	349	KKKGLPAKNLMAERRRRKK
2	343	350	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-107	bHLH family protein