PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT49754.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ARF

Protein Properties

Length: 823aa MW: 91610.9 Da PI: 6.362

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT49754.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.1	2.7e-12	127	207	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 f+k+lt sd++++g +++p++ ae+ + l+++d l +++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l+++++r+ PHT49754.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVFPP------LVITD--------PL--SRQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQLLLGIRRA 207 89*******************999755......88899........47..88999999*******************..8899999**997 PP
2	Auxin_resp	115.9	3.4e-38	232	315	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v++nPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrW nS+Wrs+k PHT49754.1 232 AAHAAATNSCFTVFFNPRASPSEFVIPLSKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWANSHWRSVK 315 79*******************************9789****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 823 aa Download sequence
MKLSTSGIGQ QTNEGEKKCL NSELWHACAG PLVCLPTVGS RVVYFPQGHS EQVAATTNKE 60 VDAHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTPQEQKDT YLPVELGIPS 120 RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLVITD PLSRQPKRHL LTTGWSVFVS 180 AKRLVAGDSV LFIWNEKNQL LLGIRRATRP QTVMPSSVIS SDSMHIGLLA AAAHAAATNS 240 CFTVFFNPRA SPSEFVIPLS KYIKAVYHTR VSVGMRFRML FETEESSVRR YMGTITGIGD 300 LDPVRWANSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWYPGS 360 SSFQDNSSEA LNGMAWLRGE SGEQGPHLMN LQSFGGMLPW MQQRVDPTIL RNDLNQQYQA 420 MLASGLQNFG SGDLMKQQLM QFQQPVQYVQ HAGSHNPLLQ QQQQQQQAMQ QAIHQHMLPA 480 QPQIDNLQRQ QQQHVSNQTE EQSHQHSYQE AYQIPNSQLQ QKQPSNVPSP SFSKPDIADQ 540 SPKFSASVSP SGMPTALGSL CSEGTSNFLN FNIIGQQPVI MEQPPQKSWM QKFSHTQLNT 600 GSNSSSLSGY AKDTSNSQET CSLDAQNQTL FGANVDSSGL LLPTTVSNVA TTSIDADMST 660 MPLGTSGFQN SLYGYVQDSS DLLHNVGQVD AQTATRTFVK VYKSGSVGRS LDITRFNSYH 720 ELRQELGQMF GIEGFLENPQ RSGWQLVFVD RENDVLLLGD DPWEAFVNNV WYIKILSPED 780 VQKLGKEEVE SLNRGALERM SNNNSADGRD FMSGLPSIGS LEY

Sequence ? help Back to Top

Protein Sequence Length: 823 aa Download sequence

MKLSTSGIGQ QTNEGEKKCL NSELWHACAG PLVCLPTVGS RVVYFPQGHS EQVAATTNKE  60
VDAHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTPQEQKDT YLPVELGIPS  120
RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLVITD PLSRQPKRHL LTTGWSVFVS  180
AKRLVAGDSV LFIWNEKNQL LLGIRRATRP QTVMPSSVIS SDSMHIGLLA AAAHAAATNS  240
CFTVFFNPRA SPSEFVIPLS KYIKAVYHTR VSVGMRFRML FETEESSVRR YMGTITGIGD  300
LDPVRWANSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYPSLFPL RLKRPWYPGS  360
SSFQDNSSEA LNGMAWLRGE SGEQGPHLMN LQSFGGMLPW MQQRVDPTIL RNDLNQQYQA  420
MLASGLQNFG SGDLMKQQLM QFQQPVQYVQ HAGSHNPLLQ QQQQQQQAMQ QAIHQHMLPA  480
QPQIDNLQRQ QQQHVSNQTE EQSHQHSYQE AYQIPNSQLQ QKQPSNVPSP SFSKPDIADQ  540
SPKFSASVSP SGMPTALGSL CSEGTSNFLN FNIIGQQPVI MEQPPQKSWM QKFSHTQLNT  600
GSNSSSLSGY AKDTSNSQET CSLDAQNQTL FGANVDSSGL LLPTTVSNVA TTSIDADMST  660
MPLGTSGFQN SLYGYVQDSS DLLHNVGQVD AQTATRTFVK VYKSGSVGRS LDITRFNSYH  720
ELRQELGQMF GIEGFLENPQ RSGWQLVFVD RENDVLLLGD DPWEAFVNNV WYIKILSPED  780
VQKLGKEEVE SLNRGALERM SNNNSADGRD FMSGLPSIGS LEY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37020.1	0.0	ARF family protein