PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT49527.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 190aa    MW: 21271.4 Da    PI: 7.7145
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT49527.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.95.5e-131959545
                SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 ks   + fsk r+ + KKA  LSvLC++e a++ifs tg+
  PHT49527.1 19 QKSSEDIVFSKKRQALCKKAMDLSVLCGIEFAILIFSVTGE 59
                67778899******************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    
MARKSCMMKE SGDRKLQKQK SSEDIVFSKK RQALCKKAMD LSVLCGIEFA ILIFSVTGEP  60
FIFGKPDAES VVNRFLKAKQ ATECSSSCRA TVEKICEHTR HPRMDPNKKV PTDDKGKGKA  120
IEENSECSTW KSVDGTDSET LEKQLTQEIE SFENDLIKEI NELKLKISAK DTESALKVIS  180
STTPSDWLSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.14e-14M-type_MADS family protein