PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT48676.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

WRKY

Protein Properties

Length: 327aa MW: 37157.1 Da PI: 5.4089

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT48676.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.7	4.9e-33	171	229	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s+fprsYYrCt+++C vkk+vers +d+++v++tYeg+H+h+ PHT48676.1 171 LDDGYKWRKYGQKAVKNSPFPRSYYRCTTTSCGVKKRVERSIQDTSIVVTTYEGTHTHP 229 59********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MEKESNLQSE YSIEDGNGNL STFVLNNPNM MSNNFDIEKD YSLTFLLENM FGGTHVDHQD 60 YDFITTTTSN SIFDLPMLPP HQPIITTSTV QDSTISDQLI NAPVTPNVSS ISSTSTELLA 120 DDYQQEKKVN QQDGEQDQDK YKKQLKPKRK NQKGKREPRF AFMTKSEIDH LDDGYKWRKY 180 GQKAVKNSPF PRSYYRCTTT SCGVKKRVER SIQDTSIVVT TYEGTHTHPC PVMPRGYAGV 240 HPVTINYGVS IGAGDSGGRT YYGDSSLFST NNLLQERRFW SPSSSLDEDH GLPQDMISSC 300 MGRDLIDNYD FSYCERFKDF AAYSRDL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49520.1	3e-44	WRKY family protein