PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT48413.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GeBP

Protein Properties

Length: 452aa MW: 48848.5 Da PI: 5.8976

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT48413.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	78.9	8.3e-25	45	139	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +f+r+w+e Dei +LqGl+ +++ + d++ fy +++++s ++ksql+eK+rrL+kKf+ +++ +g ++s+ ++hdq ++l+k++W+ PHT48413.1 45 KFHRIWTEPDEIRFLQGLVAGSSDNL-VYPRDLNVFYTRFSNNMSQPYTKSQLSEKLRRLRKKFRVVSSRLVKGFDISLLSPHDQALYDLAKQLWH 139 699***************977776.5556**************************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MDSTLPILPS SKLPIKRKTP SSPTAVAEPA VDTEPGSDPK NPPFKFHRIW TEPDEIRFLQ 60 GLVAGSSDNL VYPRDLNVFY TRFSNNMSQP YTKSQLSEKL RRLRKKFRVV SSRLVKGFDI 120 SLLSPHDQAL YDLAKQLWHP DFAYMSPFNS DKSNKSGLVG VKVRFSGNVE QPGQDGITRN 180 GVEFEGEEEL REVNVELDRG KMGGKRVEVS RLDGPVRVGV VCGIGIGDIA AKVVMDVFDE 240 CLNEFRNGVG GERSDVGSFG SGVVGEKSNL GGFGNGVVGE RSSLGGFGNG VVGERSSFGV 300 FGSGVVGERS NVDGFGSGVV GERSRIGDFT NGVVGESSNL DGVRNGFVGE RSNLGGFRNA 360 VVGERSNVDD LTNGVAGERS NLGDFTNGVV GERSNVGDFT NGVVGEGSNL GGLLKEASSD 420 KFEERWREQR VAEFDVLARR MRLVLEHSLQ RQ

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MDSTLPILPS SKLPIKRKTP SSPTAVAEPA VDTEPGSDPK NPPFKFHRIW TEPDEIRFLQ  60
GLVAGSSDNL VYPRDLNVFY TRFSNNMSQP YTKSQLSEKL RRLRKKFRVV SSRLVKGFDI  120
SLLSPHDQAL YDLAKQLWHP DFAYMSPFNS DKSNKSGLVG VKVRFSGNVE QPGQDGITRN  180
GVEFEGEEEL REVNVELDRG KMGGKRVEVS RLDGPVRVGV VCGIGIGDIA AKVVMDVFDE  240
CLNEFRNGVG GERSDVGSFG SGVVGEKSNL GGFGNGVVGE RSSLGGFGNG VVGERSSFGV  300
FGSGVVGERS NVDGFGSGVV GERSRIGDFT NGVVGESSNL DGVRNGFVGE RSNLGGFRNA  360
VVGERSNVDD LTNGVAGERS NLGDFTNGVV GERSNVGDFT NGVVGEGSNL GGLLKEASSD  420
KFEERWREQR VAEFDVLARR MRLVLEHSLQ RQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	2e-07	GeBP family protein