PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT48068.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | LBD | ||||||||
Protein Properties | Length: 187aa MW: 20475.3 Da PI: 5.225 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.9 | 3.5e-43 | 29 | 128 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpee+r da++s+vyeA+ar+rdPvyG++g i +lq+q+++l+ae a++++ PHT48068.1 29 PCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKMLQELPEEQRADAVNSMVYEANARIRDPVYGCAGAICQLQKQISELQAEFAKAHA 127 7***********************************************************************************************998 PP DUF260 100 e 100 e PHT48068.1 128 E 128 7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence |
MNSSSSSFSS SVATATSSIL STPPVILSPC AACKILRRRC VEKCVLAPYF PPTEPLKFTI 60 AHRVFGASNI IKMLQELPEE QRADAVNSMV YEANARIRDP VYGCAGAICQ LQKQISELQA 120 EFAKAHAEIM NLKCQNSNLL ALVCMEVSEN SSSSSLLSSD HINDYGNNTS MFLEDNSVYA 180 AWEPLWT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 7e-73 | LBD family protein |