PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT47893.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ARR-B

Protein Properties

Length: 653aa MW: 71143.6 Da PI: 6.6183

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT47893.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.6	2.9e-28	211	264	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl PHT47893.1 211 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 264 79*****************.******************************8 PP
2	Myb_DNA-binding	40.3	7.5e-13	213	263	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e+++++v av+qlG + +k+I + m+ g+t++++ s++qk++ PHT47893.1 213 RVVWSVELHQQFVSAVNQLGIDkaVPKRILELMNvPGLTRENVASHLQKFR 263 678**********************************************97 PP
3	Response_reg	76.7	8.1e-26	28	136	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+ + +++++q+l++ +y +v+++++++ al+ll+e++ +D++l D+ mp+mdG++ll+ e++lp+i++++ g +++ + ++ Ga PHT47893.1 28 VLVVDDDVVCLRIIEQMLRRCKY-SVTTCTQATVALNLLRERRetFDIVLSDVHMPDMDGFKLLELVGL-EMDLPVIMMSGDGRTNLVMRGVQHGAC 122 89*******************.***********988888***************87754.558******************** PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ eel + PHT47893.1 123 DYLIKPIRDEELKN 136 *********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 653 aa Download sequence
MASMSGVGAT CKSEAKVVTD HFPVGLRVLV VDDDVVCLRI IEQMLRRCKY SVTTCTQATV 60 ALNLLRERRE TFDIVLSDVH MPDMDGFKLL ELVGLEMDLP VIMMSGDGRT NLVMRGVQHG 120 ACDYLIKPIR DEELKNIWQH VVRKRYNSNK EHECSGSLDD NDRYKRGSDD VECASSVVEG 180 ADGVIKPQKK KREAKEDDTE VENDDPGTTK KPRVVWSVEL HQQFVSAVNQ LGIDKAVPKR 240 ILELMNVPGL TRENVASHLQ KFRLYLKRLS GVVQQQGGVP STFCGPMEQN SELVSLGRFD 300 IQALAASGQI PPETLTALHA ELLGRSTSNL VLPAVEQQNL LQASLQQAKC MPVDQLVAYG 360 QPLLKCPPSI SNSKHPSQSI LSAEDVHSGF GSQRAKNICM VPSSNPTGIA APNSNMFMAM 420 MQHQQQWQKQ QQLELRQRQS GPLESNYSIN VQPSCVVLPS QSPGNFQVGD SPASISRANS 480 LSKSSVVDYG VLSPQSNNSS GVIQVLDGEL RPECGSNRLS SGGSLSCSCS INADNSVGLQ 540 FHNSSSAFGS SKQLPGLNPN HLGSPVPYSI NSSQVLDQGH IRNPVVGKGA SIPSRFAVDE 600 SESAMCNLNT AKSYLEDAKV KQEPNMNLME NAKVGPANFQ KFQPGDLMSV FSD

Sequence ? help Back to Top

Protein Sequence Length: 653 aa Download sequence

MASMSGVGAT CKSEAKVVTD HFPVGLRVLV VDDDVVCLRI IEQMLRRCKY SVTTCTQATV  60
ALNLLRERRE TFDIVLSDVH MPDMDGFKLL ELVGLEMDLP VIMMSGDGRT NLVMRGVQHG  120
ACDYLIKPIR DEELKNIWQH VVRKRYNSNK EHECSGSLDD NDRYKRGSDD VECASSVVEG  180
ADGVIKPQKK KREAKEDDTE VENDDPGTTK KPRVVWSVEL HQQFVSAVNQ LGIDKAVPKR  240
ILELMNVPGL TRENVASHLQ KFRLYLKRLS GVVQQQGGVP STFCGPMEQN SELVSLGRFD  300
IQALAASGQI PPETLTALHA ELLGRSTSNL VLPAVEQQNL LQASLQQAKC MPVDQLVAYG  360
QPLLKCPPSI SNSKHPSQSI LSAEDVHSGF GSQRAKNICM VPSSNPTGIA APNSNMFMAM  420
MQHQQQWQKQ QQLELRQRQS GPLESNYSIN VQPSCVVLPS QSPGNFQVGD SPASISRANS  480
LSKSSVVDYG VLSPQSNNSS GVIQVLDGEL RPECGSNRLS SGGSLSCSCS INADNSVGLQ  540
FHNSSSAFGS SKQLPGLNPN HLGSPVPYSI NSSQVLDQGH IRNPVVGKGA SIPSRFAVDE  600
SESAMCNLNT AKSYLEDAKV KQEPNMNLME NAKVGPANFQ KFQPGDLMSV FSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	1e-107	ARR-B family protein