PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT47612.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

SBP

Protein Properties

Length: 507aa MW: 55158.8 Da PI: 9.0149

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT47612.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.4	3.7e-42	150	225	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv+gC +dls +k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk++ PHT47612.1 150 CQVQGCGKDLSPCKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPH 225 **************************************************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence
MESWSYFSGG KGFVSDESVS GKNGVMGWEL KTPSSYGSTV MCSSQHGSDN PIFQELGSPN 60 LMRKPMLSDQ MRGVGNIFGS VAGAFSGEDK SSSISRDTSL IDLKLGRFPD HVDANIFKSP 120 KSMPSFTTAE SIVPAKRMRA GGVNSHKPFC QVQGCGKDLS PCKDYHKRHK VCEVHSKTAK 180 VIVNGIEQRF CQQCSRFHLL AEFDDGKRSC RKRLAGHNER RRKPHTGTRF RGTSLATSSF 240 ACQDILGGRF LHQPKYDMND WYKNVKVEDG VDYSPPISLP FTNAQLQPKP LFASYHAKKG 300 CPYEGLPAVT TSRINESANS SLHDMRGSDF VSPSLFHTTS AGSEVLHALD TSSAIQGLSG 360 ISNSSNALSL LSSQSQGSSN HSNVFPTARP LIPPSNNSHY NVTQTSKELL GLGPHGSAGR 420 MSHTFNSSGV NSTEGGLDQI LFPSNTCGIN RIIQGSDLVS PKNQLSCEDG PTIDLLQLSS 480 QLQRVEHQRF SMQVKQDSNA FPGLRIT

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence

MESWSYFSGG KGFVSDESVS GKNGVMGWEL KTPSSYGSTV MCSSQHGSDN PIFQELGSPN  60
LMRKPMLSDQ MRGVGNIFGS VAGAFSGEDK SSSISRDTSL IDLKLGRFPD HVDANIFKSP  120
KSMPSFTTAE SIVPAKRMRA GGVNSHKPFC QVQGCGKDLS PCKDYHKRHK VCEVHSKTAK  180
VIVNGIEQRF CQQCSRFHLL AEFDDGKRSC RKRLAGHNER RRKPHTGTRF RGTSLATSSF  240
ACQDILGGRF LHQPKYDMND WYKNVKVEDG VDYSPPISLP FTNAQLQPKP LFASYHAKKG  300
CPYEGLPAVT TSRINESANS SLHDMRGSDF VSPSLFHTTS AGSEVLHALD TSSAIQGLSG  360
ISNSSNALSL LSSQSQGSSN HSNVFPTARP LIPPSNNSHY NVTQTSKELL GLGPHGSAGR  420
MSHTFNSSGV NSTEGGLDQI LFPSNTCGIN RIIQGSDLVS PKNQLSCEDG PTIDLLQLSS  480
QLQRVEHQRF SMQVKQDSNA FPGLRIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	1e-46	SBP family protein