PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PHT47611.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 245aa MW: 28076.7 Da PI: 9.0623 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 76.1 | 2.6e-24 | 9 | 46 | 1 | 38 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevavi 38 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i PHT47611.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALI 46 79***********************************9 PP | |||||||
2 | K-box | 99.2 | 5.9e-33 | 81 | 173 | 7 | 100 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++++++++ ++e+ +Lk+++e Lqr+qR++lGedL++Ls k+L+qLe+qLe+slk+iRs+K++++l+q+ +lq++e++l e n+ Lr+klee PHT47611.1 81 N-QSATDNQNNYHEYLRLKARVELLQRSQRNFLGEDLGTLSTKDLEQLENQLESSLKQIRSRKTQFMLDQLADLQQREQMLAESNRLLRRKLEE 173 3.678889***********************************************************************************987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 245 aa Download sequence |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIXGPS LPKTLNYLLS 60 TLILFLLSLN LRCSYATLEA NQSATDNQNN YHEYLRLKAR VELLQRSQRN FLGEDLGTLS 120 TKDLEQLENQ LESSLKQIRS RKTQFMLDQL ADLQQREQML AESNRLLRRK LEESTAGFPV 180 RLSWEDGADQ AMHQHNRLPH TEGFFQPLGL HSSPPHFGYN PVNTDEVNAA ATAHNMNGFI 240 HGWML |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G03710.1 | 6e-69 | MIKC_MADS family protein |