PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT47261.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GRAS | ||||||||
Protein Properties | Length: 562aa MW: 63066.4 Da PI: 6.0123 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 234.6 | 4.4e-72 | 184 | 561 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 ++lL cA a++ g+++ +q+lL l+elas +gd++ Rlaa+ ++AL ++l++ +l+++ +++ ++ n++ +l f+++sP++++ + +aN+ PHT47261.1 184 EHLLNPCAAAITVGNMNHVQHLLYVLHELASFTGDANYRLAAHGLRALTHHLSS-PGSLSASAGVTNFASANHKFFRDSLINFNDISPWFRIPNNIANS 281 699**************************************************9.445555566666666677777777777***************** PP GRAS 101 aIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfefnvlvakrl 186 +l+ + ++ +++Hi+D+++s+G+QWp+Ll++L+ + ++pp +R+T++ + + ++L +fA+++++++++n l l PHT47261.1 282 SVLQIIGEQdqlKKLHILDIGVSHGVQWPTLLEELTRGSgGPPPLVRLTVITPTIDNgelrgtpfvIGPPGYDFSSQLLSFAKAININLQINRLDNFPL 380 ******999777888*********************99956677********96555788888887777888999******************8777** PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhns.esFlerflealeyysalfdsleaklpreseer 282 ++l+ + ++ +++E+l+V+ +++lh+l ++ ++er+e+Lk++ksl Pk +v++e++ +++ns ++F++ f++ +ey + ++ds+++ + + r PHT47261.1 381 HNLNSQVINSSSDETLVVCAQFRLHNLN---HANPDERTELLKILKSLDPKGLVLSENNteCSCNScGDFATTFSRRVEYLWRFLDSTSVAY----KGR 472 ***************************8...77777889******************983355555269*******************8885....667 PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + Er+++++e+ +++++ g+ +e++ekW er++++GF ++e++ + a++llrk++ ++++rvee++g++ l Wk++p+ ++S W+ PHT47261.1 473 ESEERRMMEEEAAKALTNTGEL----NERKEKWCERMRSVGFVRDVFGEDVIDGARALLRKYDsNWEMRVEEKDGCVDLWWKGQPISFCSLWK 561 7777777777799999999998....88888********************************9999*************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 562 aa Download sequence |
MFKHQNFLST HSSTRFCDTM AIDESESNSN SDSISEWLAS TLSDIPSFLD EPYSYIDDLN 60 FYGDSLWVTD QDDQIVNHNI ILDNTCNSFN NSSPVNTSTS NIPSEPIILN HPEPLDLSKK 120 RKTSSSDHNP KASRKNQNRQ MNEAEDAHAV VEPGVQLRRS TGPKRVTTKS TGNNSSNKEG 180 RWAEHLLNPC AAAITVGNMN HVQHLLYVLH ELASFTGDAN YRLAAHGLRA LTHHLSSPGS 240 LSASAGVTNF ASANHKFFRD SLINFNDISP WFRIPNNIAN SSVLQIIGEQ DQLKKLHILD 300 IGVSHGVQWP TLLEELTRGS GGPPPLVRLT VITPTIDNGE LRGTPFVIGP PGYDFSSQLL 360 SFAKAININL QINRLDNFPL HNLNSQVINS SSDETLVVCA QFRLHNLNHA NPDERTELLK 420 ILKSLDPKGL VLSENNTECS CNSCGDFATT FSRRVEYLWR FLDSTSVAYK GRESEERRMM 480 EEEAAKALTN TGELNERKEK WCERMRSVGF VRDVFGEDVI DGARALLRKY DSNWEMRVEE 540 KDGCVDLWWK GQPISFCSLW KM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-143 | GRAS family protein |