PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT46345.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NF-YC
Protein Properties Length: 261aa    MW: 28405.9 Da    PI: 5.0834
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT46345.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC170.91.5e-53431471102
       NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                 ql++fw++q   ie+atdfknh+lPlarikki+kadedv+misae+Pvl++kace+fi eltlrswlhaeenkrrtl+++diaaa++rtd+fdflvdi+
  PHT46345.1  43 QLQMFWNYQrqeIEQATDFKNHQLPLARIKKIMKADEDVRMISAETPVLFAKACEIFIQELTLRSWLHAEENKRRTLQQNDIAAAISRTDTFDFLVDII 141
                 89*****998899************************************************************************************** PP

       NF-YC  97 prdelk 102
                 prde+k
  PHT46345.1 142 PRDEVK 147
                 ***875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MDNNNNTHQS PAEAWAAGAA AAAAAQSAAH PPQRPHDRVL QQQLQMFWNY QRQEIEQATD  60
FKNHQLPLAR IKKIMKADED VRMISAETPV LFAKACEIFI QELTLRSWLH AEENKRRTLQ  120
QNDIAAAISR TDTFDFLVDI IPRDEVKDEG VGLGLAPGGV PYYYPPLGQP APGGVILGRP  180
AVPAGAVPGV VPGAVPDVVP GSVPGADPSM YVPHLPFQVW QSMWQTSEDH SYPSGGGSSS  240
GQATDDGQIC KFWHEVEHSM G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.15e-66NF-YC family protein