PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT46325.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YC

Protein Properties

Length: 287aa MW: 31942.5 Da PI: 6.7775

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT46325.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	117	8.9e-37	1	73	30	102
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdelk 102 +kadedv+mi ae+Pvl++kace+fi eltlrsw+h+eenkrrtl+k+diaaa++rtd+fdflvdi+prde+k PHT46325.1 1 MKADEDVRMILAETPVLFAKACEMFIQELTLRSWIHSEENKRRTLQKNDIAAAISRTDTFDFLVDIIPRDEVK 73 9*********************************************************************875 PP

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence
MKADEDVRMI LAETPVLFAK ACEMFIQELT LRSWIHSEEN KRRTLQKNDI AAAISRTDTF 60 DFLVDIIPRD EVKDEGVGLG LAPGGVPYYY PPLGQPAPGG VMLGRPAVPA GVVPGAVPGV 120 VPGTVLGTLR ALFLVLFPVL IHQCMCLICR SRCGNQCGRH QRIIRILVEV EVAVDRVPMT 180 AKSEVKLEVM EGNVISLSIV NSRVATVAWL IVFSGMATMK YDILLLDHNI KFSLWQVKMR 240 DVLAQMDLEE ALLGFDKMPS SWTDEDKWRK DQKALSQIHL HLSNQIL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	48	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	4e-43	NF-YC family protein