PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT46288.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TCP

Protein Properties

Length: 403aa MW: 45229.5 Da PI: 8.1814

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT46288.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	98.2	1.6e-30	153	254	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg.......... 88 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WL+ +ak++i++l+ ++ +++s + + +++ s++++ PHT46288.1 153 GGKDRHSKVCTVKGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIDAAKHEIDKLPPLQMPPPSLShffNIKDHGLSNHHQDFFdstlretglf 251 78*************************************************************888884334453333333333222223344444444 PP TCP 89 ..k 89 + PHT46288.1 252 gkE 254 441 PP

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence
MATNSPYLFI LFLALAIWHV AYRYLFALNA SQEIAYQINN SRLRVQLLLR GFKRAESVKG 60 AFYCTSMGEE SIFTPDRHWS VTINDEDSKY LIIMMNSRKQ ETDGGDTTNS TKISSRTNTT 120 TTSATSTTPS SSSRQTWAGF KNPRIVRVSR TFGGKDRHSK VCTVKGLRDR RIRLSVPTAI 180 QLYDLQDRLG LSQPSKVVDW LIDAAKHEID KLPPLQMPPP SLSHFFNIKD HGLSNHHQDF 240 FDSTLRETGL FGKEKWIATN HHEQESSSTD HFFQPSSLPT AGMLNNNVMA FNNNNPLISH 300 TWEPNSNLSL GPFGNYHTFS SSLQTDVFPS GSQLYFCPTA AATTLSSLVP PPYNSHLNHF 360 HPNSLVPTLQ LISAPVNNNP TKGLNLQESD DHHHDNHKEG SDS

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence

MATNSPYLFI LFLALAIWHV AYRYLFALNA SQEIAYQINN SRLRVQLLLR GFKRAESVKG  60
AFYCTSMGEE SIFTPDRHWS VTINDEDSKY LIIMMNSRKQ ETDGGDTTNS TKISSRTNTT  120
TTSATSTTPS SSSRQTWAGF KNPRIVRVSR TFGGKDRHSK VCTVKGLRDR RIRLSVPTAI  180
QLYDLQDRLG LSQPSKVVDW LIDAAKHEID KLPPLQMPPP SLSHFFNIKD HGLSNHHQDF  240
FDSTLRETGL FGKEKWIATN HHEQESSSTD HFFQPSSLPT AGMLNNNVMA FNNNNPLISH  300
TWEPNSNLSL GPFGNYHTFS SSLQTDVFPS GSQLYFCPTA AATTLSSLVP PPYNSHLNHF  360
HPNSLVPTLQ LISAPVNNNP TKGLNLQESD DHHHDNHKEG SDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	2e-40	TCP family protein