PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PHT46185.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 251aa MW: 29047.7 Da PI: 9.302 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.3 | 1.2e-29 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRr g+lKKA+E+SvLCdaev +i+fs++gkl+ey+ PHT46185.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYA 58 79***********************************************8 PP | |||||||
2 | K-box | 102.6 | 5.2e-34 | 85 | 175 | 10 | 100 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 +++ s++ e+akLk+++e Lqr+q+h+ Ge+L+sL++keLq+Le+qL+++lk+iRs+Kn+l++e+i+ lqkk k+lqe+n++L+kk++e PHT46185.1 85 DHTSPGSWTLEHAKLKARLEVLQRNQKHYAGEELDSLNMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKKDKALQEQNNQLSKKVKE 175 4556679*********************************************************************************986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence |
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVGLIVFST KGKLFEYAND 60 SCMERILERY ERYSYAERQL VPNDDHTSPG SWTLEHAKLK ARLEVLQRNQ KHYAGEELDS 120 LNMKELQNLE HQLDSALKHI RSRKNQLMHE SISVLQKKDK ALQEQNNQLS KKVKEREKEL 180 VQQNNWDQQN NEISSSSFVL PQQLDSSLPR EAYQNTAGVD NGEVEGANSQ QQQQAAPNTV 240 MPQWMLRHLN G |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60910.1 | 1e-107 | MIKC_MADS family protein |