PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PHT45975.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 244aa MW: 26390.5 Da PI: 5.2493 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.5 | 6.3e-56 | 52 | 156 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ql++fw++q ie+a+dfknh+lPlar+kki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdiv PHT45975.1 52 QLQMFWNYQrqeIEQANDFKNHQLPLARVKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIV 150 89*****998899************************************************************************************** PP NF-YC 97 prdelk 102 prde+k PHT45975.1 151 PRDEVK 156 ***875 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 244 aa Download sequence |
MDNNTNTHQS PTDASAAAAA AAAATAAQSA SAVAAYPGQT PYHHLLQQQQ QQLQMFWNYQ 60 RQEIEQANDF KNHQLPLARV KKIMKADEDV RMISAEAPVL FAKACELFIL ELTIRSWLHA 120 EENKRRTLQK NDIAAAITRT DIFDFLVDIV PRDEVKDEGV GLGLGPGIVG PTASGVPYYY 180 PPLGQPAPGG VMLGRPAVPG VDPSMYVHPP PSQAWQSVWQ TSEEHSYPSG GGSSSGQGNV 240 DGQM |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 125 | 131 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G48590.1 | 2e-96 | NF-YC family protein |