PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT45892.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 354aa    MW: 40576.8 Da    PI: 6.6319
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT45892.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601216.7e-38621611100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+s ++k++++l++  +++am+++++++++ra+dPv G++++i++lq++++  kael+ + +
  PHT45892.1  62 ACAACKYQRRKCAPDCALAPYFPHDRQRQFLNAHKLFGVSSITKIIRHLDQPLKDEAMRTIIFQSDVRANDPVGGCYRIIRDLQRHIDYCKAELDIVLH 160
                 7*********************************************************************************************98877 PP

      DUF260 100 e 100
                 +
  PHT45892.1 161 Q 161
                 6 PP

Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    
MTSFSTSNNN NIAIHHHHHQ TPHTFISDHN NLNHHKYTKR VHNNNDNNHK NVLLRVSGAG  60
QACAACKYQR RKCAPDCALA PYFPHDRQRQ FLNAHKLFGV SSITKIIRHL DQPLKDEAMR  120
TIIFQSDVRA NDPVGGCYRI IRDLQRHIDY CKAELDIVLH QLAYCRAQAV AAAAVSEQQQ  180
ILTDHHAADQ ESFNDNNCDG VVNQADPLVN NNNASPYEQQ PIDQYHPHDS YYNHPRDQQT  240
EDDQQYDEIQ DGQLDLEDIN FPWSLHEQES TSTSAPNSMM KQLSVNDQCD NIKEPILEGI  300
SGFGSFEQDQ TFDQHRTYSV LRKKNRLGFH AFNKDFFLNG SLHGIARVVL HIVI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.17e-52LBD family protein