PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT45892.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | LBD | ||||||||
Protein Properties | Length: 354aa MW: 40576.8 Da PI: 6.6319 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121 | 6.7e-38 | 62 | 161 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+s ++k++++l++ +++am+++++++++ra+dPv G++++i++lq++++ kael+ + + PHT45892.1 62 ACAACKYQRRKCAPDCALAPYFPHDRQRQFLNAHKLFGVSSITKIIRHLDQPLKDEAMRTIIFQSDVRANDPVGGCYRIIRDLQRHIDYCKAELDIVLH 160 7*********************************************************************************************98877 PP DUF260 100 e 100 + PHT45892.1 161 Q 161 6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence |
MTSFSTSNNN NIAIHHHHHQ TPHTFISDHN NLNHHKYTKR VHNNNDNNHK NVLLRVSGAG 60 QACAACKYQR RKCAPDCALA PYFPHDRQRQ FLNAHKLFGV SSITKIIRHL DQPLKDEAMR 120 TIIFQSDVRA NDPVGGCYRI IRDLQRHIDY CKAELDIVLH QLAYCRAQAV AAAAVSEQQQ 180 ILTDHHAADQ ESFNDNNCDG VVNQADPLVN NNNASPYEQQ PIDQYHPHDS YYNHPRDQQT 240 EDDQQYDEIQ DGQLDLEDIN FPWSLHEQES TSTSAPNSMM KQLSVNDQCD NIKEPILEGI 300 SGFGSFEQDQ TFDQHRTYSV LRKKNRLGFH AFNKDFFLNG SLHGIARVVL HIVI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 7e-52 | LBD family protein |