PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHT45647.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | LBD | ||||||||
Protein Properties | Length: 203aa MW: 22456.5 Da PI: 6.8852 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.6 | 3.7e-42 | 39 | 138 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la++++ PHT45647.1 39 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTIAHRVFGASNIIKFLQELPEYQRADAVSSMVYEANARMRDPVYGSAGAICQLQKQVNELQAQLAKTQA 137 7***********************************************************************************************998 PP DUF260 100 e 100 e PHT45647.1 138 E 138 7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence |
MESSNTAINS LITTTTPPSP DSVSPPCNSP SPPRVVVTPC AACKILRRRC AEKCVLAPYF 60 PPNDPIKFTI AHRVFGASNI IKFLQELPEY QRADAVSSMV YEANARMRDP VYGSAGAICQ 120 LQKQVNELQA QLAKTQAELV TMQCQHANLM AYVYVEMGQS PPTSPQQSLD KFTNSTTHST 180 FHNNINFLDE NNNYGTLLET LWT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 2e-67 | LBD family protein |