PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT45242.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YC

Protein Properties

Length: 455aa MW: 52093.4 Da PI: 8.4857

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT45242.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	23.8	9.7e-08	353	439	13	99
NF-YC 13 atdfknhelPlarikkilkade.dvkmisaeaPvllskacelfileltlrswlhaeenkrrt.lkksdiaaavtrtdifdflvdivprd 99 +++ + ++P ri +i+k ++ d++m+ ea ++ ka e f lel r + +r++ + + ++ +v++ fdfl d vp++ PHT45242.1 353 KSESALYQFPQNRIYRIIKNENaDIRML-QEATFVVNKATEKF-LELFCREAYACSFLDRNSyVGYNHLSLVVSKRPRFDFLSDFVPQK 439 45566789*********865278877.69*******9.699999877777777765278999****************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MPKKSNGNSD NHDGDEPEIF VISSSSTESQ DSVENEEESD GAQSVDNEYV IDSDEEEEEE 60 EEENVVESKK DLDVEKKVYR RHGNKEDENE GKRGKKTVGS SEQSESENLK TYMRKKKNQN 120 EEEKEEEVEE KEQNVPANMA KRKKEKNDKA KKEDKVKEEK IGKTAKSNED SSRGGKNEKK 180 NKKDEKREVA NKAKSNGGEI KKEENKKKKR EEKREREGQS AKKVKSNGGK IEKEENKKKK 240 RAEEAETEGK SPTKAKSNGD LSQLKKEEKK TKKTQNKKEG GEEAEEKLVK KSNSNGVASP 300 ATKEKMKKDK EKESKANNGK VNNEARSNGT PQKNEEKKLK AKKKRDDDEE NEKSESALYQ 360 FPQNRIYRII KNENADIRML QEATFVVNKA TEKFLELFCR EAYACSFLDR NSYVGYNHLS 420 LVVSKRPRFD FLSDFVPQKV RAEDALGEIP KAEES

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MPKKSNGNSD NHDGDEPEIF VISSSSTESQ DSVENEEESD GAQSVDNEYV IDSDEEEEEE  60
EEENVVESKK DLDVEKKVYR RHGNKEDENE GKRGKKTVGS SEQSESENLK TYMRKKKNQN  120
EEEKEEEVEE KEQNVPANMA KRKKEKNDKA KKEDKVKEEK IGKTAKSNED SSRGGKNEKK  180
NKKDEKREVA NKAKSNGGEI KKEENKKKKR EEKREREGQS AKKVKSNGGK IEKEENKKKK  240
RAEEAETEGK SPTKAKSNGD LSQLKKEEKK TKKTQNKKEG GEEAEEKLVK KSNSNGVASP  300
ATKEKMKKDK EKESKANNGK VNNEARSNGT PQKNEEKKLK AKKKRDDDEE NEKSESALYQ  360
FPQNRIYRII KNENADIRML QEATFVVNKA TEKFLELFCR EAYACSFLDR NSYVGYNHLS  420
LVVSKRPRFD FLSDFVPQKV RAEDALGEIP KAEES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	143	RKKKNQNEEEKEEEVEEKEQNVPANMAKRK
2	114	155	RKKKNQNEEEKEEEVEEKEQNVPANMAKRKKEKNDKAKKEDK
3	141	182	RKKKNQNEEEKEEEVEEKEQNVPANMAKRKKEKNDKAKKEDK
4	206	247	RKKKNQNEEEKEEEVEEKEQNVPANMAKRKKEKNDKAKKEDK
5	207	248	RKKKNQNEEEKEEEVEEKEQNVPANMAKRKKEKNDKAKKEDK
6	237	278	RKKKNQNEEEKEEEVEEKEQNVPANMAKRKKEKNDKAKKEDK
7	238	279	RKKKNQNEEEKEEEVEEKEQNVPANMAKRKKEKNDKAKKEDK
8	269	310	RKKKNQNEEEKEEEVEEKEQNVPANMAKRKKEKNDKAKKEDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	4e-25	NF-YC family protein