PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT45168.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 206aa MW: 22714.7 Da PI: 5.6185

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT45168.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.9	6.2e-42	43	142	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++Cvlapyfp ++p kf +h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+++la++++ PHT45168.1 43 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHRVFGASNIIKFLQELPEFQRADAVSSMVYEANARLRDPVYGCAGAICQLQKQVNELQVQLAKAQA 141 7***********************************************************************************************998 PP DUF260 100 e 100 e PHT45168.1 142 E 142 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence
MEHSTDTTTA TTITPSPYSS RSVSPSSSSS PNSPPLPQVV VSPCAACKIL RRRCAEKCVL 60 APYFPPNDPI KFTTAHRVFG ASNIIKFLQE LPEFQRADAV SSMVYEANAR LRDPVYGCAG 120 AICQLQKQVN ELQVQLAKAQ AEIVNMQHEQ ANFMTLICME MAQSPQTSPQ QSLENFTNIP 180 QHGSSQSDVS FLDESNFVSI WETLWA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	3e-67	LBD family protein